RNA–Protein interactions for RNA: ENST00000466017.1

VPS41-211, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-211ENST00000466017 NHLRC2Q8NBF2 726 aa4□□□□□ -1.77
VPS41-211ENST00000466017 OR2D3Q8NGH3 330 aa4□□□□□ -1.77
VPS41-211ENST00000466017 KIR2DL5BQ8NHK3 375 aa4□□□□□ -1.77
VPS41-211ENST00000466017 Q8TAT8 98 aa4□□□□□ -1.77
VPS41-211ENST00000466017 C1QTNF4Q9BXJ3 329 aa4□□□□□ -1.77
VPS41-211ENST00000466017 CNFNQ9BYD5 112 aa4□□□□□ -1.77
VPS41-211ENST00000466017 NAT8BQ9UHF3 227 aa4□□□□□ -1.77
VPS41-211ENST00000466017 AGRNO00468 2067 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 IGHV1OR15-1A0A075B7D0 117 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 RBMY1BA6NDE4 496 aaKnown RBP3.99□□□□□ -1.77
VPS41-211ENST00000466017 RBMY1EA6NEQ0 496 aaKnown RBP3.99□□□□□ -1.77
VPS41-211ENST00000466017 UBE2CO00762 179 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 PRYO14603 147 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 SCO1O75880 301 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 RBMY1DP0C7P1 496 aaKnown RBP3.99□□□□□ -1.77
VPS41-211ENST00000466017 PIK3CD-AS1Q5SR53 167 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 PRR9Q5T870 116 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 GFI1BQ5VTD9 330 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 PRR27Q6MZM9 219 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 NUP35Q8NFH5 326 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 GTSF1Q8WW33 167 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 NDUFAF3Q9BU61 184 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 SRD5A3Q9H8P0 318 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 SCRT2Q9NQ03 307 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 SELENOKQ9Y6D0 94 aa3.99□□□□□ -1.77
VPS41-211ENST00000466017 LOC102724200A0A096LPH7 203 aaPredicted RBP3.98□□□□□ -1.77
VPS41-211ENST00000466017 A0A1B0GXF2 115 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 HIGD1CA8MV81 97 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 ORM1P02763 201 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 S100A8P05109 93 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 GIG44P09565 113 aaPredicted RBP3.98□□□□□ -1.77
VPS41-211ENST00000466017 RNASE4P34096 147 aaKnown RBP3.98□□□□□ -1.77
VPS41-211ENST00000466017 FAM3BP58499 235 aaPredicted RBP3.98□□□□□ -1.77
VPS41-211ENST00000466017 CACNG7P62955 275 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 RIGQ13278 110 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 KPRPQ5T749 579 aaPredicted RBP3.98□□□□□ -1.77
VPS41-211ENST00000466017 TMEM88Q6PEY1 159 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 FAM159AQ6UWV7 190 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 CBLN2Q8IUK8 224 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 CSNK1G2-AS1Q8NCQ2 148 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 FRZBQ92765 325 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 FAM210BQ96KR6 192 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 GNB1LQ9BYB4 327 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 CSTL1Q9H114 145 aa3.98□□□□□ -1.77
VPS41-211ENST00000466017 TEP1Q99973 2627 aaKnown RBP3.97□□□□□ -1.77
VPS41-211ENST00000466017 NIPBLQ6KC79 2804 aaeCLIP3.97□□□□□ -1.77
VPS41-211ENST00000466017 TRAV12-3A0A0B4J271 114 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 A0A1B0GUT8 65 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 SMIM9A6NGZ8 99 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 M0R2Z0 102 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 INSP01308 110 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 MT-ND6P03923 174 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 RAB5AP20339 215 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 CTRLP40313 264 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 APOC4P55056 127 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 SPINK13Q1W4C9 94 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 C10orf25Q5T742 122 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 ZNF705AQ6ZN79 300 aaPredicted RBP3.97□□□□□ -1.77
VPS41-211ENST00000466017 ZNF493Q6ZR52 646 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 C1orf158Q8N1D5 194 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 DEFB125Q8N687 156 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 FER1L6-AS1Q8NA97 138 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 C9orf85Q96MD7 179 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 SPXQ9BT56 116 aa3.97□□□□□ -1.77
VPS41-211ENST00000466017 SETD2Q9BYW2 2564 aaPredicted RBP3.97□□□□□ -1.77
VPS41-211ENST00000466017 FBN1P35555 2871 aaKnown RBP3.96□□□□□ -1.78
VPS41-211ENST00000466017 TRAV12-2A0A075B6T6 113 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 TGIF2-C20orf24A0A0A6YYL0 155 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 IGHV3-16A0A0C4DH30 117 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 PHOX2AO14813 284 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 GNRH2O43555 120 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 CIDEAO60543 219 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 NXPH4O95158 308 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 CA1P00915 261 aaPredicted RBP3.96□□□□□ -1.78
VPS41-211ENST00000466017 IGKV3-20P01619 116 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 HLA-DQA1P01909 254 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 IGKV2-30P06310 120 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 ARMS2P0C7Q2 107 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 RBMY1A1P0DJD3 496 aaKnown RBP3.96□□□□□ -1.78
VPS41-211ENST00000466017 RBMY1CP0DJD4 496 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 RNASE3P12724 160 aaKnown RBP3.96□□□□□ -1.78
VPS41-211ENST00000466017 ASIPP42127 132 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 RBMY1FQ15415 496 aaKnown RBP3.96□□□□□ -1.78
VPS41-211ENST00000466017 LYZL1Q6UWQ5 148 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 Q6ZQT7 251 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 BORCS7Q96B45 105 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 PGLYRP4Q96LB8 373 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 LINC01587Q99440 93 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 TMEM191AQ9H0A3 160 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 GOLT1BQ9Y3E0 138 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 URGCP-MRPS24S4R325 110 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 ATRQ13535 2644 aa3.96□□□□□ -1.78
VPS41-211ENST00000466017 MAST4O15021 2626 aa3.95□□□□□ -1.78
VPS41-211ENST00000466017 GZMBP10144 247 aa3.95□□□□□ -1.78
VPS41-211ENST00000466017 PRB4P10163 310 aaPredicted RBP3.95□□□□□ -1.78
VPS41-211ENST00000466017 NTF3P20783 257 aa3.95□□□□□ -1.78
VPS41-211ENST00000466017 S100A4P26447 101 aaKnown RBP3.95□□□□□ -1.78
VPS41-211ENST00000466017 HBBP68871 147 aa3.95□□□□□ -1.78
VPS41-211ENST00000466017 DAZ2Q13117 558 aaKnown RBP3.95□□□□□ -1.78
VPS41-211ENST00000466017 LGALS9BQ3B8N2 356 aa3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 217.4 ms