RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 PRAC2D3DTV9 90 aa12.38□□□□□ -0.43
COL17A1-202ENST00000369733 TCTEX1D4Q5JR98 221 aa12.38□□□□□ -0.43
COL17A1-202ENST00000369733 BAALCQ8WXS3 180 aa12.38□□□□□ -0.43
COL17A1-202ENST00000369733 BAALC-AS2P0C853 105 aa12.38□□□□□ -0.43
COL17A1-202ENST00000369733 IGKV1D-37A0A075B6S9 117 aa12.37□□□□□ -0.43
COL17A1-202ENST00000369733 E9PLD3 99 aa12.37□□□□□ -0.43
COL17A1-202ENST00000369733 TOMM6Q96B49 74 aa12.37□□□□□ -0.43
COL17A1-202ENST00000369733 TMEM126AQ9H061 195 aa12.37□□□□□ -0.43
COL17A1-202ENST00000369733 LINC01356Q8N9X3 169 aa12.37□□□□□ -0.43
COL17A1-202ENST00000369733 BUB3O43684 328 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 ACYP1P07311 99 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 LINC01620Q4KN68 170 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 Q9H8V8 135 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 NCOA6Q14686 2063 aaPredicted RBP12.36□□□□□ -0.43
COL17A1-202ENST00000369733 MALRD1Q5VYJ5 2156 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 ACACAQ13085 2346 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 IGHV7-81A0A0B4J1V7 117 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 TINCRA0A1B0GVN0 87 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 LINC01619G3V211 115 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 RS1O15537 224 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 SMIM20Q8N5G0 67 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 ICOSQ9Y6W8 199 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.36□□□□□ -0.43
COL17A1-202ENST00000369733 IGKV2-29A2NJV5 120 aaPredicted RBP12.36□□□□□ -0.43
COL17A1-202ENST00000369733 PROP1O75360 226 aa12.36□□□□□ -0.43
COL17A1-202ENST00000369733 NXPH4O95158 308 aa12.35□□□□□ -0.43
COL17A1-202ENST00000369733 COL4A4P53420 1690 aaPredicted RBP12.35□□□□□ -0.43
COL17A1-202ENST00000369733 RBX1P62877 108 aa12.35□□□□□ -0.43
COL17A1-202ENST00000369733 HAMPP81172 84 aa12.35□□□□□ -0.43
COL17A1-202ENST00000369733 A0A0J9YXV3 536 aa12.35□□□□□ -0.43
COL17A1-202ENST00000369733 ATP6V0E2Q8NHE4 81 aa12.35□□□□□ -0.43
COL17A1-202ENST00000369733 DKK4Q9UBT3 224 aa12.35□□□□□ -0.43
COL17A1-202ENST00000369733 MED13Q9UHV7 2174 aa12.34□□□□□ -0.43
COL17A1-202ENST00000369733 TRAV26-1A0A087WT03 109 aa12.34□□□□□ -0.43
COL17A1-202ENST00000369733 CRYGCP07315 174 aa12.34□□□□□ -0.43
COL17A1-202ENST00000369733 RPL39P62891 51 aaKnown RBP12.34□□□□□ -0.43
COL17A1-202ENST00000369733 MBD6Q96DN6 1003 aa12.34□□□□□ -0.43
COL17A1-202ENST00000369733 CACNA1HO95180 2353 aa12.34□□□□□ -0.43
COL17A1-202ENST00000369733 ARFGEF3Q5TH69 2177 aa12.34□□□□□ -0.43
COL17A1-202ENST00000369733 PLA2G2CQ5R387 149 aa12.34□□□□□ -0.43
COL17A1-202ENST00000369733 H3BUA1 57 aa12.34□□□□□ -0.43
COL17A1-202ENST00000369733 CRLF1O75462 422 aa12.33□□□□□ -0.44
COL17A1-202ENST00000369733 EIF4EBP1Q13541 118 aaPredicted RBP12.33□□□□□ -0.44
COL17A1-202ENST00000369733 NCKAP5O14513 1909 aa12.33□□□□□ -0.44
COL17A1-202ENST00000369733 CACNA1GO43497 2377 aa12.33□□□□□ -0.44
COL17A1-202ENST00000369733 GTF3C1Q12789 2109 aa12.33□□□□□ -0.44
COL17A1-202ENST00000369733 PTH2Q96A98 100 aa12.32□□□□□ -0.44
COL17A1-202ENST00000369733 GATA3P23771 443 aa12.32□□□□□ -0.44
COL17A1-202ENST00000369733 MLST8Q9BVC4 326 aa12.32□□□□□ -0.44
COL17A1-202ENST00000369733 C9orf47Q6ZRZ4 202 aa12.31□□□□□ -0.44
COL17A1-202ENST00000369733 C11orf86A6NJI1 115 aa12.31□□□□□ -0.44
COL17A1-202ENST00000369733 C16orf54Q6UWD8 224 aa12.31□□□□□ -0.44
COL17A1-202ENST00000369733 SPANXCQ9NY87 97 aa12.31□□□□□ -0.44
COL17A1-202ENST00000369733 CENPVL3A0A0U1RRI6 287 aa12.31□□□□□ -0.44
COL17A1-202ENST00000369733 K7ENP7 123 aa12.31□□□□□ -0.44
COL17A1-202ENST00000369733 MSMPQ1L6U9 139 aa12.31□□□□□ -0.44
COL17A1-202ENST00000369733 RNF114Q9Y508 228 aa12.3□□□□□ -0.44
COL17A1-202ENST00000369733 IGFL2Q6UWQ7 119 aa12.3□□□□□ -0.44
COL17A1-202ENST00000369733 RPL32P62910 135 aaKnown RBP12.3□□□□□ -0.44
COL17A1-202ENST00000369733 IGLV1-47P01700 117 aa12.3□□□□□ -0.44
COL17A1-202ENST00000369733 COL6A6A6NMZ7 2263 aa12.29□□□□□ -0.44
COL17A1-202ENST00000369733 WT1P19544 449 aaPredicted RBP12.29□□□□□ -0.44
COL17A1-202ENST00000369733 RBMY1FQ15415 496 aaKnown RBP12.29□□□□□ -0.44
COL17A1-202ENST00000369733 FAM236AA0A1B0GUQ0 79 aa12.29□□□□□ -0.44
COL17A1-202ENST00000369733 FAM236BA0A1B0GV22 79 aa12.29□□□□□ -0.44
COL17A1-202ENST00000369733 C1orf229Q6ZS94 237 aaPredicted RBP12.29□□□□□ -0.44
COL17A1-202ENST00000369733 PIFOQ8TCI5 191 aa12.29□□□□□ -0.44
COL17A1-202ENST00000369733 TIMM17AQ99595 171 aa12.29□□□□□ -0.44
COL17A1-202ENST00000369733 TRBV10-2A0A0K0K1G8 114 aa12.28□□□□□ -0.44
COL17A1-202ENST00000369733 SPTAN1Q13813 2472 aaKnown RBP12.28□□□□□ -0.44
COL17A1-202ENST00000369733 SLC25A29Q8N8R3 303 aa12.28□□□□□ -0.44
COL17A1-202ENST00000369733 HERV-K104P63124 156 aa12.28□□□□□ -0.44
COL17A1-202ENST00000369733 DSCR8Q96T75 97 aa12.28□□□□□ -0.44
COL17A1-202ENST00000369733 NDUFA11Q86Y39 141 aa12.28□□□□□ -0.44
COL17A1-202ENST00000369733 PCNX1Q96RV3 2341 aa12.27□□□□□ -0.44
COL17A1-202ENST00000369733 ZNF80P51504 273 aaPredicted RBP12.27□□□□□ -0.44
COL17A1-202ENST00000369733 U3KQE9 123 aa12.27□□□□□ -0.44
COL17A1-202ENST00000369733 A0A0B4J2C4 111 aa12.27□□□□□ -0.45
COL17A1-202ENST00000369733 Q8N9W7 124 aa12.27□□□□□ -0.45
COL17A1-202ENST00000369733 C1orf43Q9BWL3 253 aa12.27□□□□□ -0.45
COL17A1-202ENST00000369733 ORMDL1Q9P0S3 153 aa12.27□□□□□ -0.45
COL17A1-202ENST00000369733 TMEM131Q92545 1883 aa12.27□□□□□ -0.45
COL17A1-202ENST00000369733 CGB3P0DN86 165 aa12.27□□□□□ -0.45
COL17A1-202ENST00000369733 CGB7P0DN87 165 aa12.27□□□□□ -0.45
COL17A1-202ENST00000369733 SPANXB1Q9NS25 103 aaPredicted RBP12.27□□□□□ -0.45
COL17A1-202ENST00000369733 F8WEM9 126 aa12.26□□□□□ -0.45
COL17A1-202ENST00000369733 FREM1Q5H8C1 2179 aa12.26□□□□□ -0.45
COL17A1-202ENST00000369733 MAPK1IP1LQ8NDC0 245 aa12.26□□□□□ -0.45
COL17A1-202ENST00000369733 TCL1BO95988 128 aa12.26□□□□□ -0.45
COL17A1-202ENST00000369733 DOPEY2Q9Y3R5 2298 aa12.26□□□□□ -0.45
COL17A1-202ENST00000369733 GRNP28799 593 aaKnown RBP12.26□□□□□ -0.45
COL17A1-202ENST00000369733 DAND5Q8N907 189 aa12.26□□□□□ -0.45
COL17A1-202ENST00000369733 MED14OSP0DP75 135 aa12.25□□□□□ -0.45
COL17A1-202ENST00000369733 Q6ZUT4 128 aa12.25□□□□□ -0.45
COL17A1-202ENST00000369733 RNF223E7ERA6 249 aa12.25□□□□□ -0.45
COL17A1-202ENST00000369733 SEM1Q6ZVN7 128 aa12.25□□□□□ -0.45
COL17A1-202ENST00000369733 CLEC2BQ92478 149 aa12.25□□□□□ -0.45
COL17A1-202ENST00000369733 RIF1Q5UIP0 2472 aaKnown RBP12.25□□□□□ -0.45
COL17A1-202ENST00000369733 ELANEP08246 267 aa12.24□□□□□ -0.45
COL17A1-202ENST00000369733 PCNX3Q9H6A9 2034 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms