RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 DUSP14O95147 198 aaKnown RBP16.62■□□□□ 0.25
PDLIM2-203ENST00000339162 AMTNQ6UX39 209 aa16.62■□□□□ 0.25
PDLIM2-203ENST00000339162 ODF3Q96PU9 254 aa16.62■□□□□ 0.25
PDLIM2-203ENST00000339162 KRTDAPP60985 99 aa16.62■□□□□ 0.25
PDLIM2-203ENST00000339162 MAP6D1Q9H9H5 199 aa16.62■□□□□ 0.25
PDLIM2-203ENST00000339162 U3KQK5 164 aa16.62■□□□□ 0.25
PDLIM2-203ENST00000339162 RNASE3P12724 160 aaKnown RBP16.61■□□□□ 0.25
PDLIM2-203ENST00000339162 ZNF256Q9Y2P7 627 aaPredicted RBP16.61■□□□□ 0.25
PDLIM2-203ENST00000339162 PHLDA3Q9Y5J5 127 aa16.61■□□□□ 0.25
PDLIM2-203ENST00000339162 NPYP01303 97 aa16.6■□□□□ 0.25
PDLIM2-203ENST00000339162 DMRTA1Q5VZB9 504 aa16.6■□□□□ 0.25
PDLIM2-203ENST00000339162 TRAV2A0A0B4J234 112 aa16.6■□□□□ 0.25
PDLIM2-203ENST00000339162 CD7P09564 240 aa16.6■□□□□ 0.25
PDLIM2-203ENST00000339162 GATA1P15976 413 aaPredicted RBP16.6■□□□□ 0.25
PDLIM2-203ENST00000339162 IFI27P40305 119 aaPredicted RBP16.6■□□□□ 0.25
PDLIM2-203ENST00000339162 IGHV4-4A0A075B6R2 117 aa16.59■□□□□ 0.25
PDLIM2-203ENST00000339162 H3BMM0 161 aa16.59■□□□□ 0.25
PDLIM2-203ENST00000339162 HLA-DRB4P13762 266 aa16.59■□□□□ 0.25
PDLIM2-203ENST00000339162 CACNG7P62955 275 aa16.59■□□□□ 0.25
PDLIM2-203ENST00000339162 PRSS3P2Q8NHM4 247 aa16.59■□□□□ 0.25
PDLIM2-203ENST00000339162 SPAG8Q99932 426 aaPredicted RBP16.59■□□□□ 0.25
PDLIM2-203ENST00000339162 HLA-DRB4X5D2U9 266 aa16.59■□□□□ 0.25
PDLIM2-203ENST00000339162 IGHV1-24A0A0C4DH33 117 aa16.58■□□□□ 0.25
PDLIM2-203ENST00000339162 RBMY1BA6NDE4 496 aaKnown RBP16.58■□□□□ 0.25
PDLIM2-203ENST00000339162 RBMY1EA6NEQ0 496 aaKnown RBP16.58■□□□□ 0.25
PDLIM2-203ENST00000339162 OR4C46A6NHA9 309 aa16.58■□□□□ 0.25
PDLIM2-203ENST00000339162 SAP30O75446 220 aa16.58■□□□□ 0.25
PDLIM2-203ENST00000339162 RBMY1DP0C7P1 496 aaKnown RBP16.58■□□□□ 0.25
PDLIM2-203ENST00000339162 TSPOP30536 169 aa16.58■□□□□ 0.25
PDLIM2-203ENST00000339162 CHCHD1Q96BP2 118 aaKnown RBP16.58■□□□□ 0.25
PDLIM2-203ENST00000339162 TRAV26-2A0A0B4J265 109 aa16.58■□□□□ 0.24
PDLIM2-203ENST00000339162 SMIM15Q7Z3B0 74 aa16.57■□□□□ 0.24
PDLIM2-203ENST00000339162 SCRT2Q9NQ03 307 aa16.57■□□□□ 0.24
PDLIM2-203ENST00000339162 SIGLEC8Q9NYZ4 499 aa16.57■□□□□ 0.24
PDLIM2-203ENST00000339162 CRLF1O75462 422 aa16.57■□□□□ 0.24
PDLIM2-203ENST00000339162 KIR2DL5BA0A0G2JN68 375 aa16.56■□□□□ 0.24
PDLIM2-203ENST00000339162 KIR2DL5BA0A0G2JPC4 375 aa16.56■□□□□ 0.24
PDLIM2-203ENST00000339162 KIR2DL5AQ8N109 375 aa16.56■□□□□ 0.24
PDLIM2-203ENST00000339162 C3orf79P0CE67 100 aa16.55■□□□□ 0.24
PDLIM2-203ENST00000339162 RBMY1A1P0DJD3 496 aaKnown RBP16.55■□□□□ 0.24
PDLIM2-203ENST00000339162 RBMY1CP0DJD4 496 aa16.55■□□□□ 0.24
PDLIM2-203ENST00000339162 RBMY1FQ15415 496 aaKnown RBP16.55■□□□□ 0.24
PDLIM2-203ENST00000339162 ODF3L2Q3SX64 289 aa16.55■□□□□ 0.24
PDLIM2-203ENST00000339162 MUC4Q99102 2169 aa16.55■□□□□ 0.24
PDLIM2-203ENST00000339162 F8P00451 2351 aa16.55■□□□□ 0.24
PDLIM2-203ENST00000339162 AP5S1Q9NUS5 200 aa16.55■□□□□ 0.24
PDLIM2-203ENST00000339162 MDFICQ9P1T7 246 aa16.55■□□□□ 0.24
PDLIM2-203ENST00000339162 CRXO43186 299 aaPredicted RBP16.54■□□□□ 0.24
PDLIM2-203ENST00000339162 LINC00173Q6ZV60 143 aa16.54■□□□□ 0.24
PDLIM2-203ENST00000339162 FA2HQ7L5A8 372 aa16.54■□□□□ 0.24
PDLIM2-203ENST00000339162 Q8N1Y9 231 aa16.54■□□□□ 0.24
PDLIM2-203ENST00000339162 C14orf178Q8N769 122 aaPredicted RBP16.54■□□□□ 0.24
PDLIM2-203ENST00000339162 JMJD1CQ15652 2540 aa16.54■□□□□ 0.24
PDLIM2-203ENST00000339162 HTN1P15515 57 aa16.54■□□□□ 0.24
PDLIM2-203ENST00000339162 TDRG1Q3Y452 100 aa16.54■□□□□ 0.24
PDLIM2-203ENST00000339162 TRAV25A0A0B4J276 109 aa16.53■□□□□ 0.24
PDLIM2-203ENST00000339162 IGHV1OR15-1A0A075B7D0 117 aa16.53■□□□□ 0.24
PDLIM2-203ENST00000339162 MED14OSP0DP75 135 aa16.53■□□□□ 0.24
PDLIM2-203ENST00000339162 TENM1Q9UKZ4 2725 aa16.52■□□□□ 0.24
PDLIM2-203ENST00000339162 TNFRSF6BO95407 300 aa16.52■□□□□ 0.24
PDLIM2-203ENST00000339162 PRM2P04554 102 aa16.52■□□□□ 0.24
PDLIM2-203ENST00000339162 Q8N976 141 aa16.52■□□□□ 0.24
PDLIM2-203ENST00000339162 PPBPP02775 128 aa16.51■□□□□ 0.23
PDLIM2-203ENST00000339162 IGHV3-16A0A0C4DH30 117 aa16.51■□□□□ 0.23
PDLIM2-203ENST00000339162 JPT2Q9H910 190 aa16.51■□□□□ 0.23
PDLIM2-203ENST00000339162 A8MTW9 85 aa16.5■□□□□ 0.23
PDLIM2-203ENST00000339162 EREGO14944 169 aa16.5■□□□□ 0.23
PDLIM2-203ENST00000339162 NDUFA11Q86Y39 141 aa16.5■□□□□ 0.23
PDLIM2-203ENST00000339162 LEPROTL1O95214 131 aa16.5■□□□□ 0.23
PDLIM2-203ENST00000339162 NUTF2P61970 127 aaKnown RBP16.5■□□□□ 0.23
PDLIM2-203ENST00000339162 SNHG12Q9BXW3 62 aa16.5■□□□□ 0.23
PDLIM2-203ENST00000339162 TEX43Q6ZNM6 134 aa16.49■□□□□ 0.23
PDLIM2-203ENST00000339162 MAP1LC3AQ9H492 121 aa16.49■□□□□ 0.23
PDLIM2-203ENST00000339162 OR11H12B2RN74 326 aa16.48■□□□□ 0.23
PDLIM2-203ENST00000339162 MGPP08493 103 aa16.48■□□□□ 0.23
PDLIM2-203ENST00000339162 OR2K2Q8NGT1 345 aa16.48■□□□□ 0.23
PDLIM2-203ENST00000339162 CBY3A6NI87 242 aa16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 M0R143 59 aa16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 IGLV1-51P01701 117 aa16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 PF4P02776 101 aa16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 C20orf144Q9BQM9 153 aa16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 DPH3P1Q9H4G8 78 aa16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 VWFP04275 2813 aa16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 SPATA12Q7Z6I5 190 aa16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 NRACQ8N912 160 aa16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 AP1S3Q96PC3 154 aa16.47■□□□□ 0.23
PDLIM2-203ENST00000339162 A0A096LNJ9 63 aa16.46■□□□□ 0.23
PDLIM2-203ENST00000339162 NXPH4O95158 308 aa16.46■□□□□ 0.23
PDLIM2-203ENST00000339162 C9orf85Q96MD7 179 aa16.46■□□□□ 0.23
PDLIM2-203ENST00000339162 BTF3P20290 206 aaKnown RBP16.46■□□□□ 0.23
PDLIM2-203ENST00000339162 STHQ8IWL8 128 aa16.46■□□□□ 0.23
PDLIM2-203ENST00000339162 WFDC10AQ9H1F0 79 aa16.46■□□□□ 0.23
PDLIM2-203ENST00000339162 A0A087WWL8 130 aa16.45■□□□□ 0.22
PDLIM2-203ENST00000339162 MRPL52Q86TS9 123 aaKnown RBP16.45■□□□□ 0.22
PDLIM2-203ENST00000339162 LAMTOR2Q9Y2Q5 125 aa16.45■□□□□ 0.22
PDLIM2-203ENST00000339162 ATRQ13535 2644 aa16.45■□□□□ 0.22
PDLIM2-203ENST00000339162 ATOH7Q8N100 152 aa16.45■□□□□ 0.22
PDLIM2-203ENST00000339162 XCL2Q9UBD3 114 aa16.45■□□□□ 0.22
PDLIM2-203ENST00000339162 TCAPO15273 167 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms