RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 A0A087WWL8 130 aa11.21□□□□□ -0.61
CCNF-201ENST00000293968 LINC01546A6NGU7 62 aa11.21□□□□□ -0.61
CCNF-201ENST00000293968 OOSP1A8MZH6 123 aa11.21□□□□□ -0.61
CCNF-201ENST00000293968 DUSP14O95147 198 aaKnown RBP11.21□□□□□ -0.61
CCNF-201ENST00000293968 TRBV7-3A0A075B6L6 115 aa11.21□□□□□ -0.62
CCNF-201ENST00000293968 CKS1BP61024 79 aa11.21□□□□□ -0.62
CCNF-201ENST00000293968 ASH1LQ9NR48 2969 aaKnown RBP11.21□□□□□ -0.62
CCNF-201ENST00000293968 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP11.21□□□□□ -0.621e-6■■■■□ 21.5
CCNF-201ENST00000293968 IGKV3-20P01619 116 aa11.2□□□□□ -0.62
CCNF-201ENST00000293968 DLX4Q92988 240 aaPredicted RBP11.2□□□□□ -0.62
CCNF-201ENST00000293968 HERVK_113P61574 105 aa11.2□□□□□ -0.62
CCNF-201ENST00000293968 ZFP2Q6ZN57 461 aa11.2□□□□□ -0.62
CCNF-201ENST00000293968 C9orf47Q6ZRZ4 202 aa11.2□□□□□ -0.62
CCNF-201ENST00000293968 IGHV3-64A0A075B6Q5 118 aa11.2□□□□□ -0.62
CCNF-201ENST00000293968 TRBV12-3P01733 135 aa11.2□□□□□ -0.62
CCNF-201ENST00000293968 TP53TG1Q9Y2A0 90 aa11.2□□□□□ -0.62
CCNF-201ENST00000293968 ZNF256Q9Y2P7 627 aaPredicted RBP11.2□□□□□ -0.62
CCNF-201ENST00000293968 TRBV7-1A0A0A6YYK4 115 aa11.2□□□□□ -0.62
CCNF-201ENST00000293968 UNQ9165/PRO28630Q6UXU0 137 aa11.2□□□□□ -0.62
CCNF-201ENST00000293968 TOMM6Q96B49 74 aa11.2□□□□□ -0.62
CCNF-201ENST00000293968 ATP6V0BQ99437 205 aa11.19□□□□□ -0.62
CCNF-201ENST00000293968 TRAV41A0A0B4J266 112 aa11.19□□□□□ -0.62
CCNF-201ENST00000293968 BRD3OSQ6XYD6 125 aa11.19□□□□□ -0.62
CCNF-201ENST00000293968 C9orf139Q6ZV77 190 aa11.19□□□□□ -0.62
CCNF-201ENST00000293968 NEXN-AS1Q8NBZ9 246 aa11.19□□□□□ -0.62
CCNF-201ENST00000293968 PF4V1P10720 104 aa11.19□□□□□ -0.62
CCNF-201ENST00000293968 SPG11Q96JI7 2443 aa11.19□□□□□ -0.62
CCNF-201ENST00000293968 TRAV12-1A0A0B4J245 112 aa11.18□□□□□ -0.62
CCNF-201ENST00000293968 JPT2Q9H910 190 aa11.18□□□□□ -0.62
CCNF-201ENST00000293968 RPL39P62891 51 aaKnown RBP11.18□□□□□ -0.62
CCNF-201ENST00000293968 MORN3Q6PF18 240 aaPredicted RBP11.17□□□□□ -0.62
CCNF-201ENST00000293968 LINC00477Q96M19 166 aa11.17□□□□□ -0.62
CCNF-201ENST00000293968 UBE2E1P51965 193 aa11.17□□□□□ -0.62
CCNF-201ENST00000293968 EBI3Q14213 229 aa11.17□□□□□ -0.62
CCNF-201ENST00000293968 Q1RN00 199 aa11.17□□□□□ -0.62
CCNF-201ENST00000293968 PSMG3-AS1Q96PY0 264 aa11.17□□□□□ -0.62
CCNF-201ENST00000293968 C11orf86A6NJI1 115 aa11.17□□□□□ -0.62
CCNF-201ENST00000293968 SPINK8P0C7L1 97 aa11.16□□□□□ -0.62
CCNF-201ENST00000293968 FAM159AQ6UWV7 190 aa11.16□□□□□ -0.62
CCNF-201ENST00000293968 RAX2Q96IS3 184 aa11.16□□□□□ -0.62
CCNF-201ENST00000293968 KIR2DL4Q99706 377 aa11.16□□□□□ -0.62
CCNF-201ENST00000293968 BPESC1Q9GZL8 116 aa11.16□□□□□ -0.62
CCNF-201ENST00000293968 SIRPDQ9H106 197 aa11.16□□□□□ -0.62
CCNF-201ENST00000293968 CENPVL3A0A0U1RRI6 287 aa11.16□□□□□ -0.62
CCNF-201ENST00000293968 NPFFO15130 113 aa11.16□□□□□ -0.62
CCNF-201ENST00000293968 TSPAN13O95857 204 aa11.15□□□□□ -0.62
CCNF-201ENST00000293968 CD7P09564 240 aa11.15□□□□□ -0.62
CCNF-201ENST00000293968 FOXI1Q12951 378 aa11.15□□□□□ -0.62
CCNF-201ENST00000293968 ZFAND2AQ8N6M9 145 aa11.15□□□□□ -0.62
CCNF-201ENST00000293968 C1orf122Q6ZSJ8 110 aa11.15□□□□□ -0.62
CCNF-201ENST00000293968 OVOL1O14753 267 aa11.15□□□□□ -0.63
CCNF-201ENST00000293968 BEX4Q9NWD9 120 aaPredicted RBP11.15□□□□□ -0.63
CCNF-201ENST00000293968 LGALS3P17931 250 aaKnown RBP11.14□□□□□ -0.63
CCNF-201ENST00000293968 MRPL53Q96EL3 112 aaKnown RBP11.14□□□□□ -0.63
CCNF-201ENST00000293968 C1QTNF4Q9BXJ3 329 aa11.14□□□□□ -0.63
CCNF-201ENST00000293968 TRAV12-3A0A0B4J271 114 aa11.14□□□□□ -0.63
CCNF-201ENST00000293968 HTN1P15515 57 aa11.14□□□□□ -0.63
CCNF-201ENST00000293968 ZNF56Q15929 161 aa11.14□□□□□ -0.63
CCNF-201ENST00000293968 LYRM7Q5U5X0 104 aa11.14□□□□□ -0.63
CCNF-201ENST00000293968 SPATA25Q9BR10 227 aa11.13□□□□□ -0.63
CCNF-201ENST00000293968 SCGB1A1P11684 91 aa11.13□□□□□ -0.63
CCNF-201ENST00000293968 IGHV4-4A0A075B6R2 117 aa11.13□□□□□ -0.63
CCNF-201ENST00000293968 ADORA2A-AS1P86434 159 aa11.13□□□□□ -0.63
CCNF-201ENST00000293968 PRO0461Q9UI25 63 aa11.13□□□□□ -0.63
CCNF-201ENST00000293968 TRAV2A0A0B4J234 112 aa11.12□□□□□ -0.63
CCNF-201ENST00000293968 C5orf56Q8N8D9 126 aa11.12□□□□□ -0.63
CCNF-201ENST00000293968 OPRPNQ99935 248 aaPredicted RBP11.12□□□□□ -0.63
CCNF-201ENST00000293968 RHPN1-AS1Q9BWJ2 59 aa11.12□□□□□ -0.63
CCNF-201ENST00000293968 PRSS47A8MTI9 375 aa11.12□□□□□ -0.63
CCNF-201ENST00000293968 K7ENP7 123 aa11.12□□□□□ -0.63
CCNF-201ENST00000293968 Q6ZS46 218 aa11.12□□□□□ -0.63
CCNF-201ENST00000293968 GEMIN7Q9H840 131 aaKnown RBP11.12□□□□□ -0.63
CCNF-201ENST00000293968 SORL1Q92673 2214 aa11.11□□□□□ -0.63
CCNF-201ENST00000293968 SDHAF1A6NFY7 115 aa11.11□□□□□ -0.63
CCNF-201ENST00000293968 MT-ATP8P03928 68 aa11.11□□□□□ -0.63
CCNF-201ENST00000293968 PMVKQ15126 192 aa11.11□□□□□ -0.63
CCNF-201ENST00000293968 MOB4Q9Y3A3 225 aa11.11□□□□□ -0.63
CCNF-201ENST00000293968 PPP1R17O96001 155 aa11.11□□□□□ -0.63
CCNF-201ENST00000293968 MAP1AP78559 2803 aaPredicted RBP11.11□□□□□ -0.63
CCNF-201ENST00000293968 A8MWV9 139 aa11.11□□□□□ -0.63
CCNF-201ENST00000293968 TCF15Q12870 199 aa11.11□□□□□ -0.63
CCNF-201ENST00000293968 CFAP126Q5VTH2 177 aa11.11□□□□□ -0.63
CCNF-201ENST00000293968 NFE4Q86UQ8 179 aa11.11□□□□□ -0.63
CCNF-201ENST00000293968 TCL1BO95988 128 aa11.1□□□□□ -0.63
CCNF-201ENST00000293968 C11orf71Q6IPW1 123 aa11.1□□□□□ -0.63
CCNF-201ENST00000293968 CLUHP3Q96NS8 147 aa11.1□□□□□ -0.63
CCNF-201ENST00000293968 SUMO4Q6EEV6 95 aa11.1□□□□□ -0.63
CCNF-201ENST00000293968 TRAV12-2A0A075B6T6 113 aa11.1□□□□□ -0.63
CCNF-201ENST00000293968 SMCPP49901 116 aaPredicted RBP11.1□□□□□ -0.63
CCNF-201ENST00000293968 NDUFA11Q86Y39 141 aa11.1□□□□□ -0.63
CCNF-201ENST00000293968 RNASE3P12724 160 aaKnown RBP11.09□□□□□ -0.63
CCNF-201ENST00000293968 A0A1W2PPR1 153 aa11.09□□□□□ -0.63
CCNF-201ENST00000293968 ITLN2Q8WWU7 325 aaPredicted RBP11.09□□□□□ -0.63
CCNF-201ENST00000293968 VCYO14598 125 aa11.09□□□□□ -0.63
CCNF-201ENST00000293968 LENEPQ9Y5L5 61 aa11.09□□□□□ -0.63
CCNF-201ENST00000293968 DOPEY2Q9Y3R5 2298 aa11.09□□□□□ -0.63
CCNF-201ENST00000293968 TRAV26-1A0A087WT03 109 aa11.09□□□□□ -0.63
CCNF-201ENST00000293968 FAM223BA6NKX1 122 aa11.09□□□□□ -0.63
CCNF-201ENST00000293968 PRSS2P07478 247 aa11.09□□□□□ -0.63
CCNF-201ENST00000293968 FAM223AQ8IWN6 122 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 71.7 ms