RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 CCDC140Q96MF4 163 aa11.38□□□□□ -0.59
SMARCA4-219ENST00000592604 VCX2Q9H322 139 aa11.38□□□□□ -0.59
SMARCA4-219ENST00000592604 RNF183Q96D59 192 aa11.38□□□□□ -0.59
SMARCA4-219ENST00000592604 RIF1Q5UIP0 2472 aaKnown RBP11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 TRAV26-2A0A0B4J265 109 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 IGHV3-66A0A0C4DH42 116 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 IGLL5B9A064 214 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 PLNP26678 52 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 ECSCRQ19T08 205 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 SIRPDQ9H106 197 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 U3KQE9 123 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 TRAV12-1A0A0B4J245 112 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 ATP6V0E1O15342 81 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 CD300EQ496F6 205 aaPredicted RBP11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 FOXI2Q6ZQN5 318 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 AGRNO00468 2067 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 LRBAP50851 2863 aa11.37□□□□□ -0.59
SMARCA4-219ENST00000592604 TEX48A0A1B0GUV7 120 aa11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 B5MCH6 92 aa11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 ZFP36P26651 326 aaKnown RBP11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 CLEC19AQ6UXS0 136 aa11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 C8orf86Q6ZUL3 223 aa11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 CSMD1Q96PZ7 3565 aa11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 AJUBAQ96IF1 538 aa11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 METTL26Q96S19 204 aa11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 LINC01619G3V211 115 aa11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 C12orf74Q32Q52 190 aa11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 SPANXN1Q5VSR9 72 aa11.36□□□□□ -0.59
SMARCA4-219ENST00000592604 IGHV3OR16-13A0A075B7E8 117 aa11.35□□□□□ -0.59
SMARCA4-219ENST00000592604 IGHV3-74A0A0B4J1X5 117 aa11.35□□□□□ -0.59
SMARCA4-219ENST00000592604 F8W1H4 67 aa11.35□□□□□ -0.59
SMARCA4-219ENST00000592604 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.35□□□□□ -0.59
SMARCA4-219ENST00000592604 EEF1AKMT3Q96AZ1 226 aa11.35□□□□□ -0.59
SMARCA4-219ENST00000592604 ZNF207O43670 478 aaKnown RBP11.35□□□□□ -0.59
SMARCA4-219ENST00000592604 EFNA4P52798 201 aa11.35□□□□□ -0.59
SMARCA4-219ENST00000592604 TCF15Q12870 199 aa11.35□□□□□ -0.59
SMARCA4-219ENST00000592604 SMIM2Q9BVW6 85 aa11.35□□□□□ -0.59
SMARCA4-219ENST00000592604 TRBV7-1A0A0A6YYK4 115 aa11.34□□□□□ -0.59
SMARCA4-219ENST00000592604 F8VRH5 84 aa11.34□□□□□ -0.59
SMARCA4-219ENST00000592604 H7C1H1 209 aa11.34□□□□□ -0.59
SMARCA4-219ENST00000592604 Q6ZQT7 251 aa11.34□□□□□ -0.59
SMARCA4-219ENST00000592604 LENEPQ9Y5L5 61 aa11.34□□□□□ -0.59
SMARCA4-219ENST00000592604 K7ENP7 123 aa11.34□□□□□ -0.59
SMARCA4-219ENST00000592604 TRBV7-3A0A075B6L6 115 aa11.33□□□□□ -0.6
SMARCA4-219ENST00000592604 UBE2E1P51965 193 aa11.33□□□□□ -0.6
SMARCA4-219ENST00000592604 G3V318 75 aa11.33□□□□□ -0.6
SMARCA4-219ENST00000592604 A0A1B0GWB2 263 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 CCL21O00585 134 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 TGFAP01135 160 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 SLC25A16P16260 332 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 GAGE5Q13069 117 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 GAGE6Q13070 117 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 CDSNQ15517 529 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 ORMDL2Q53FV1 153 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 TLN1Q9Y490 2541 aaKnown RBP11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 IGHV3-49A0A0A0MS15 119 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 CENPVL3A0A0U1RRI6 287 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 H3BVH4 76 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 K7EMI3 77 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 TOMM6Q96B49 74 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 HIST1H4GQ99525 98 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 SPANXB1Q9NS25 103 aaPredicted RBP11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 MRPL16Q9NX20 251 aaKnown RBP11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 LINC01548A6NM66 108 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 PRR9Q5T870 116 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 C20orf78Q9BR46 151 aa11.32□□□□□ -0.6
SMARCA4-219ENST00000592604 NEXN-AS1Q8NBZ9 246 aa11.31□□□□□ -0.6
SMARCA4-219ENST00000592604 ITLN2Q8WWU7 325 aaPredicted RBP11.31□□□□□ -0.6
SMARCA4-219ENST00000592604 MYMXA0A1B0GTQ4 84 aa11.31□□□□□ -0.6
SMARCA4-219ENST00000592604 WFDC2Q14508 124 aa11.31□□□□□ -0.6
SMARCA4-219ENST00000592604 SUMO2P61956 95 aaKnown RBP11.3□□□□□ -0.6
SMARCA4-219ENST00000592604 RRN3P1Q2M238 152 aa11.3□□□□□ -0.6
SMARCA4-219ENST00000592604 C9orf139Q6ZV77 190 aa11.3□□□□□ -0.6
SMARCA4-219ENST00000592604 C16orf92Q96LL3 132 aa11.3□□□□□ -0.6
SMARCA4-219ENST00000592604 GLMPQ8WWB7 406 aa11.3□□□□□ -0.6
SMARCA4-219ENST00000592604 RASL10AQ92737 203 aa11.3□□□□□ -0.6
SMARCA4-219ENST00000592604 LINC00477Q96M19 166 aa11.3□□□□□ -0.6
SMARCA4-219ENST00000592604 SCGB3A1Q96QR1 104 aa11.3□□□□□ -0.6
SMARCA4-219ENST00000592604 ADORA2A-AS1P86434 159 aa11.29□□□□□ -0.6
SMARCA4-219ENST00000592604 ATP5G2Q06055 141 aa11.29□□□□□ -0.6
SMARCA4-219ENST00000592604 C20orf173Q96LM9 149 aa11.29□□□□□ -0.6
SMARCA4-219ENST00000592604 SAA4P35542 130 aa11.29□□□□□ -0.6
SMARCA4-219ENST00000592604 ZFAND2AQ8N6M9 145 aa11.29□□□□□ -0.6
SMARCA4-219ENST00000592604 DPH3P1Q9H4G8 78 aa11.29□□□□□ -0.6
SMARCA4-219ENST00000592604 ZFHX2Q9C0A1 2572 aaPredicted RBP11.28□□□□□ -0.6
SMARCA4-219ENST00000592604 MED13LQ71F56 2210 aa11.28□□□□□ -0.6
SMARCA4-219ENST00000592604 CACNA1BQ00975 2339 aa11.28□□□□□ -0.6
SMARCA4-219ENST00000592604 TRAV25A0A0B4J276 109 aa11.28□□□□□ -0.6
SMARCA4-219ENST00000592604 H3BMG7 143 aa11.28□□□□□ -0.6
SMARCA4-219ENST00000592604 J3QR89 54 aa11.28□□□□□ -0.6
SMARCA4-219ENST00000592604 ERG28Q9UKR5 140 aa11.28□□□□□ -0.6
SMARCA4-219ENST00000592604 M0R381 172 aa11.28□□□□□ -0.6
SMARCA4-219ENST00000592604 IGF1P05019 195 aa11.28□□□□□ -0.6
SMARCA4-219ENST00000592604 PRO0461Q9UI25 63 aa11.28□□□□□ -0.6
SMARCA4-219ENST00000592604 TRAV21A0A0B4J279 112 aa11.27□□□□□ -0.6
SMARCA4-219ENST00000592604 C5orf56Q8N8D9 126 aa11.27□□□□□ -0.6
SMARCA4-219ENST00000592604 SPATA25Q9BR10 227 aa11.27□□□□□ -0.6
SMARCA4-219ENST00000592604 PTPRQQ9UMZ3 2332 aa11.27□□□□□ -0.61
SMARCA4-219ENST00000592604 HRNRQ86YZ3 2850 aaPredicted RBP11.27□□□□□ -0.61
SMARCA4-219ENST00000592604 RNF223E7ERA6 249 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms