RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 C8orf86Q6ZUL3 223 aa8.43□□□□□ -1.06
SHMT2-216ENST00000554975 SBSPONQ8IVN8 264 aa8.43□□□□□ -1.06
SHMT2-216ENST00000554975 C2orf88Q9BSF0 95 aa8.43□□□□□ -1.06
SHMT2-216ENST00000554975 LENEPQ9Y5L5 61 aa8.43□□□□□ -1.06
SHMT2-216ENST00000554975 A0A0G2JLM5 398 aa8.42□□□□□ -1.06
SHMT2-216ENST00000554975 NDUFA4O00483 81 aa8.42□□□□□ -1.06
SHMT2-216ENST00000554975 SH2D1AO60880 128 aa8.42□□□□□ -1.06
SHMT2-216ENST00000554975 APOHP02749 345 aaPredicted RBP8.42□□□□□ -1.06
SHMT2-216ENST00000554975 TRGV3P03979 118 aa8.42□□□□□ -1.06
SHMT2-216ENST00000554975 BTF3P20290 206 aaKnown RBP8.42□□□□□ -1.06
SHMT2-216ENST00000554975 HIST1H1AQ02539 215 aaPredicted RBP8.42□□□□□ -1.06
SHMT2-216ENST00000554975 GDF5OSQ5U4N7 250 aa8.42□□□□□ -1.06
SHMT2-216ENST00000554975 CLEC19AQ6UXS0 136 aa8.42□□□□□ -1.06
SHMT2-216ENST00000554975 ZNF493Q6ZR52 646 aa8.42□□□□□ -1.06
SHMT2-216ENST00000554975 C17orf77Q96MU5 243 aa8.42□□□□□ -1.06
SHMT2-216ENST00000554975 DUX3Q96PT4 197 aa8.42□□□□□ -1.06
SHMT2-216ENST00000554975 HSPB8Q9UJY1 196 aa8.42□□□□□ -1.06
SHMT2-216ENST00000554975 IGKV2-40A0A087WW87 121 aaPredicted RBP8.41□□□□□ -1.06
SHMT2-216ENST00000554975 IGKV2D-40P01614 121 aaPredicted RBP8.41□□□□□ -1.06
SHMT2-216ENST00000554975 IGHV3-23P01764 117 aa8.41□□□□□ -1.06
SHMT2-216ENST00000554975 CLEC3BP05452 202 aa8.41□□□□□ -1.06
SHMT2-216ENST00000554975 TMEM78Q5T7P6 136 aa8.41□□□□□ -1.06
SHMT2-216ENST00000554975 NIT1Q86X76 327 aa8.41□□□□□ -1.06
SHMT2-216ENST00000554975 MIEN1Q9BRT3 115 aa8.41□□□□□ -1.06
SHMT2-216ENST00000554975 MCRIP2Q9BUT9 160 aaKnown RBP8.41□□□□□ -1.06
SHMT2-216ENST00000554975 SSBP4Q9BWG4 385 aaPredicted RBP8.41□□□□□ -1.06
SHMT2-216ENST00000554975 PPP1R14DQ9NXH3 145 aa8.41□□□□□ -1.06
SHMT2-216ENST00000554975 U3KQE9 123 aa8.41□□□□□ -1.06
SHMT2-216ENST00000554975 FABP5P3A8MUU1 101 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 M0R143 59 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 ARMS2P0C7Q2 107 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 C3orf79P0CE67 100 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 ARL3P36405 182 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 LCN12Q6JVE5 192 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 LCNL1Q6ZST4 164 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 FA2HQ7L5A8 372 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 FER1L6-AS1Q8NA97 138 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 KLHL30-AS1Q8NEE0 82 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 TMEM70Q9BUB7 260 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 UQCR10Q9UDW1 63 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 LAMTOR2Q9Y2Q5 125 aa8.4□□□□□ -1.06
SHMT2-216ENST00000554975 ALMS1Q8TCU4 4167 aa8.4□□□□□ -1.07
SHMT2-216ENST00000554975 G3V318 75 aa8.39□□□□□ -1.07
SHMT2-216ENST00000554975 LEPROTL1O95214 131 aa8.39□□□□□ -1.07
SHMT2-216ENST00000554975 PPBPP02775 128 aa8.39□□□□□ -1.07
SHMT2-216ENST00000554975 LINC01559Q495D7 138 aa8.39□□□□□ -1.07
SHMT2-216ENST00000554975 C8orf49Q96NF6 230 aa8.39□□□□□ -1.07
SHMT2-216ENST00000554975 CNFNQ9BYD5 112 aa8.39□□□□□ -1.07
SHMT2-216ENST00000554975 TMEM191AQ9H0A3 160 aa8.39□□□□□ -1.07
SHMT2-216ENST00000554975 AP5S1Q9NUS5 200 aa8.39□□□□□ -1.07
SHMT2-216ENST00000554975 PAM16Q9Y3D7 125 aa8.39□□□□□ -1.07
SHMT2-216ENST00000554975 PCLOQ9Y6V0 5065 aa8.39□□□□□ -1.07
SHMT2-216ENST00000554975 RPLP1P05386 114 aaKnown RBP8.38□□□□□ -1.07
SHMT2-216ENST00000554975 LINC00614P0C842 121 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 IGLC6P0CF74 106 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 ZNF138P52744 262 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 SPATA45Q537H7 98 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 PET117Q6UWS5 81 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 SMIM15Q7Z3B0 74 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 ORMDL3Q8N138 153 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 OR10AG1Q8NH19 301 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 RAX2Q96IS3 184 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 MAP1LC3CQ9BXW4 147 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 SMAD5-AS1Q9Y6J3 95 aa8.38□□□□□ -1.07
SHMT2-216ENST00000554975 IGHV1-24A0A0C4DH33 117 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 TRBV7-9A0A0J9YWB2 115 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 HSBP1L1C9JCN9 74 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 OVOL1O14753 267 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 CRXO43186 299 aaPredicted RBP8.37□□□□□ -1.07
SHMT2-216ENST00000554975 ELANEP08246 267 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 SSTP61278 116 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 FOXE3Q13461 319 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 FAM104BQ5XKR9 115 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 C9orf47Q6ZRZ4 202 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 FAM19A2Q8N3H0 131 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 Q8N976 141 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 GLMPQ8WWB7 406 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 TPPP3Q9BW30 176 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 ZMAT5Q9UDW3 170 aaKnown RBP8.37□□□□□ -1.07
SHMT2-216ENST00000554975 RYR1P21817 5038 aa8.37□□□□□ -1.07
SHMT2-216ENST00000554975 TRAV9-2A0A087WT02 112 aa8.36□□□□□ -1.07
SHMT2-216ENST00000554975 CRIP1P50238 77 aa8.36□□□□□ -1.07
SHMT2-216ENST00000554975 CACNG7P62955 275 aa8.36□□□□□ -1.07
SHMT2-216ENST00000554975 DEFB136Q30KP8 78 aa8.36□□□□□ -1.07
SHMT2-216ENST00000554975 LYZL1Q6UWQ5 148 aa8.36□□□□□ -1.07
SHMT2-216ENST00000554975 ZNF705AQ6ZN79 300 aaPredicted RBP8.36□□□□□ -1.07
SHMT2-216ENST00000554975 Q8TAT8 98 aa8.36□□□□□ -1.07
SHMT2-216ENST00000554975 C16orf92Q96LL3 132 aa8.36□□□□□ -1.07
SHMT2-216ENST00000554975 EDA2RQ9HAV5 297 aa8.36□□□□□ -1.07
SHMT2-216ENST00000554975 C2orf70A6NJV1 201 aa8.35□□□□□ -1.07
SHMT2-216ENST00000554975 IGHG4P01861 327 aa8.35□□□□□ -1.07
SHMT2-216ENST00000554975 ORM1P02763 201 aa8.35□□□□□ -1.07
SHMT2-216ENST00000554975 PPIFP30405 207 aaKnown RBP8.35□□□□□ -1.07
SHMT2-216ENST00000554975 OR10J6PQ8NGY7 276 aa8.35□□□□□ -1.07
SHMT2-216ENST00000554975 PRSS3P2Q8NHM4 247 aa8.35□□□□□ -1.07
SHMT2-216ENST00000554975 PRELID3AQ96N28 172 aa8.35□□□□□ -1.07
SHMT2-216ENST00000554975 VGLL1Q99990 258 aa8.35□□□□□ -1.07
SHMT2-216ENST00000554975 ST20Q9HBF5 79 aa8.35□□□□□ -1.07
SHMT2-216ENST00000554975 IGHV3-35A0A0C4DH35 117 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms