RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	BLCAP	P62952	87 aa		11.34	□□□□□ -0.59
DDX55-209	ENST00000542286	TWIST1	Q15672	202 aa		11.34	□□□□□ -0.59
DDX55-209	ENST00000542286	UNQ9165/PRO28630	Q6UXU0	137 aa		11.34	□□□□□ -0.59
DDX55-209	ENST00000542286	CCL19	Q99731	98 aa		11.34	□□□□□ -0.59
DDX55-209	ENST00000542286		A0A1B0GV72	72 aa		11.34	□□□□□ -0.59
DDX55-209	ENST00000542286	PRSS47	A8MTI9	375 aa		11.34	□□□□□ -0.59
DDX55-209	ENST00000542286	IGF1	P05019	195 aa		11.34	□□□□□ -0.59
DDX55-209	ENST00000542286	TSSC4	Q9Y5U2	329 aa	Predicted RBP	11.34	□□□□□ -0.59
DDX55-209	ENST00000542286	TRBV6-1	A0A0K0K1D8	114 aa		11.33	□□□□□ -0.59
DDX55-209	ENST00000542286	KLK15	Q9H2R5	256 aa		11.33	□□□□□ -0.59
DDX55-209	ENST00000542286	C11orf21	Q9P2W6	132 aa		11.33	□□□□□ -0.59
DDX55-209	ENST00000542286	SON	P18583	2426 aa	Known RBP	11.33	□□□□□ -0.59
DDX55-209	ENST00000542286	NAV2	Q8IVL1	2488 aa		11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	AVP	P01185	164 aa		11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	EDN2	P20800	178 aa		11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	GCSH	P23434	173 aa		11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	TMEM95	Q3KNT9	176 aa		11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	CD300E	Q496F6	205 aa	Predicted RBP	11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	SIGLEC8	Q9NYZ4	499 aa		11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	SETD2	Q9BYW2	2564 aa	Predicted RBP	11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	GAGE12H	A6NDE8	117 aa		11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	TRGV3	P03979	118 aa		11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	GATA1	P15976	413 aa	Predicted RBP	11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	ATP5J2	P56134	94 aa		11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	ATP6V0B	Q99437	205 aa		11.33	□□□□□ -0.6
DDX55-209	ENST00000542286	TRAV8-2	A0A0B4J237	113 aa		11.32	□□□□□ -0.6
DDX55-209	ENST00000542286	TRAV41	A0A0B4J266	112 aa		11.32	□□□□□ -0.6
DDX55-209	ENST00000542286		H3BUX3	64 aa		11.32	□□□□□ -0.6
DDX55-209	ENST00000542286	IGHV1-69D	A0A0B4J2H0	117 aa		11.32	□□□□□ -0.6
DDX55-209	ENST00000542286	IGHV1-69	P01742	117 aa		11.32	□□□□□ -0.6
DDX55-209	ENST00000542286	FXYD2	P54710	66 aa		11.32	□□□□□ -0.6
DDX55-209	ENST00000542286	MRPL51	Q4U2R6	128 aa	Known RBP	11.32	□□□□□ -0.6
DDX55-209	ENST00000542286	AGPAT4-IT1	Q9H0P7	198 aa		11.32	□□□□□ -0.6
DDX55-209	ENST00000542286	PAX8	Q06710	450 aa		11.31	□□□□□ -0.6
DDX55-209	ENST00000542286		K7ERJ3	54 aa		11.31	□□□□□ -0.6
DDX55-209	ENST00000542286	EVI2A	P22794	236 aa		11.31	□□□□□ -0.6
DDX55-209	ENST00000542286	EEF1AKMT3	Q96AZ1	226 aa		11.31	□□□□□ -0.6
DDX55-209	ENST00000542286	C18orf15	Q96N68	181 aa		11.31	□□□□□ -0.6
DDX55-209	ENST00000542286	NPY	P01303	97 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	SRD5A1	P18405	259 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	ATP5G2	Q06055	141 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	C8orf86	Q6ZUL3	223 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	IFI27L1	Q96BM0	104 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	PRELID3A	Q96N28	172 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	NF1	P21359	2839 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	WFDC2	Q14508	124 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	FAM104B	Q5XKR9	115 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	GATD1	Q8NB37	220 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	DKK2	Q9UBU2	259 aa		11.3	□□□□□ -0.6
DDX55-209	ENST00000542286	TMEM238L	A0A1B0GVL6	79 aa		11.29	□□□□□ -0.6
DDX55-209	ENST00000542286	C20orf173	Q96LM9	149 aa		11.29	□□□□□ -0.6
DDX55-209	ENST00000542286	MOB4	Q9Y3A3	225 aa		11.29	□□□□□ -0.6
DDX55-209	ENST00000542286	CCDC168	Q8NDH2	2452 aa		11.29	□□□□□ -0.6
DDX55-209	ENST00000542286	HBD	P02042	147 aa		11.29	□□□□□ -0.6
DDX55-209	ENST00000542286	C10orf105	Q8TEF2	133 aa		11.29	□□□□□ -0.6
DDX55-209	ENST00000542286	PIMREG	Q9BSJ6	248 aa		11.29	□□□□□ -0.6
DDX55-209	ENST00000542286	IGKV3D-20	A0A0C4DH25	116 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286		A0A1B0GW15	77 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286		F6UB75	175 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	PRR9	Q5T870	116 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	C10orf99	Q6UWK7	81 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	GLMP	Q8WWB7	406 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	METTL26	Q96S19	204 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	TTTY13	Q9BZ97	58 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	SPANXB1	Q9NS25	103 aa	Predicted RBP	11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	CKS2	P33552	79 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	RAB9A	P51151	201 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	RPL11	P62913	178 aa	Known RBP	11.28	□□□□□ -0.6
DDX55-209	ENST00000542286		J3QR89	54 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	SCGB2A1	O75556	95 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	ARL3	P36405	182 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	WFDC12	Q8WWY7	111 aa		11.28	□□□□□ -0.6
DDX55-209	ENST00000542286	TRAV26-2	A0A0B4J265	109 aa		11.27	□□□□□ -0.61
DDX55-209	ENST00000542286	PF4V1	P10720	104 aa		11.27	□□□□□ -0.61
DDX55-209	ENST00000542286	PSMG3-AS1	Q96PY0	264 aa		11.27	□□□□□ -0.61
DDX55-209	ENST00000542286	IGKV2D-26	A0A0A0MRZ7	120 aa		11.27	□□□□□ -0.61
DDX55-209	ENST00000542286	IGLC6	P0CF74	106 aa		11.27	□□□□□ -0.61
DDX55-209	ENST00000542286	FOXI2	Q6ZQN5	318 aa		11.27	□□□□□ -0.61
DDX55-209	ENST00000542286	SH2D6	Q7Z4S9	175 aa		11.27	□□□□□ -0.61
DDX55-209	ENST00000542286	ORMDL3	Q8N138	153 aa		11.27	□□□□□ -0.61
DDX55-209	ENST00000542286	HIF1AN	Q9NWT6	349 aa		11.27	□□□□□ -0.61
DDX55-209	ENST00000542286	NHP2	Q9NX24	153 aa	Known RBP	11.27	□□□□□ -0.61
DDX55-209	ENST00000542286	CKS1B	P61024	79 aa		11.26	□□□□□ -0.61
DDX55-209	ENST00000542286	ZNF493	Q6ZR52	646 aa		11.26	□□□□□ -0.61
DDX55-209	ENST00000542286	PHLDA1	Q8WV24	401 aa	Predicted RBP	11.26	□□□□□ -0.61
DDX55-209	ENST00000542286	C16orf92	Q96LL3	132 aa		11.26	□□□□□ -0.61
DDX55-209	ENST00000542286	FABP5P3	A8MUU1	101 aa		11.26	□□□□□ -0.61
DDX55-209	ENST00000542286		F8W1H4	67 aa		11.26	□□□□□ -0.61
DDX55-209	ENST00000542286	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	11.26	□□□□□ -0.61
DDX55-209	ENST00000542286		K7EMI3	77 aa		11.26	□□□□□ -0.61
DDX55-209	ENST00000542286	SPAG8	Q99932	426 aa	Predicted RBP	11.26	□□□□□ -0.61
DDX55-209	ENST00000542286	SPATA25	Q9BR10	227 aa		11.26	□□□□□ -0.61
DDX55-209	ENST00000542286	CHAC1	Q9BUX1	264 aa		11.26	□□□□□ -0.61
DDX55-209	ENST00000542286	SCGB2A2	Q13296	93 aa		11.25	□□□□□ -0.61
DDX55-209	ENST00000542286	ETDB	Q3ZM63	59 aa		11.25	□□□□□ -0.61
DDX55-209	ENST00000542286	RNF185	Q96GF1	192 aa		11.25	□□□□□ -0.61
DDX55-209	ENST00000542286		U3KQK5	164 aa		11.25	□□□□□ -0.61
DDX55-209	ENST00000542286	TRBV7-1	A0A0A6YYK4	115 aa		11.25	□□□□□ -0.61
DDX55-209	ENST00000542286		Q6AWC8	147 aa		11.24	□□□□□ -0.61
DDX55-209	ENST00000542286	GPHB5	Q86YW7	130 aa		11.24	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms