RNA–Protein interactions for RNA: ENST00000530339.1

PCDHA4-203, Transcript of protocadherin alpha 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA4, Length 5,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA4-203ENST00000530339 IGHV7-4-1A0A0J9YVY3 117 aa12.17□□□□□ -0.46
PCDHA4-203ENST00000530339 RUSC1-AS1Q66K80 236 aa12.17□□□□□ -0.46
PCDHA4-203ENST00000530339 C11orf1Q9H5F2 150 aa12.17□□□□□ -0.46
PCDHA4-203ENST00000530339 SCRT2Q9NQ03 307 aa12.17□□□□□ -0.46
PCDHA4-203ENST00000530339 TRBV25-1A0A075B6N4 114 aa12.17□□□□□ -0.46
PCDHA4-203ENST00000530339 DAD1P61803 113 aa12.17□□□□□ -0.46
PCDHA4-203ENST00000530339 MED13LQ71F56 2210 aa12.17□□□□□ -0.46
PCDHA4-203ENST00000530339 PLXNB3Q9ULL4 1909 aa12.17□□□□□ -0.46
PCDHA4-203ENST00000530339 LINC00173Q6ZV60 143 aa12.17□□□□□ -0.46
PCDHA4-203ENST00000530339 MORN5Q5VZ52 161 aa12.16□□□□□ -0.46
PCDHA4-203ENST00000530339 SPINK13Q1W4C9 94 aa12.16□□□□□ -0.46
PCDHA4-203ENST00000530339 ANKRD39Q53RE8 183 aa12.16□□□□□ -0.46
PCDHA4-203ENST00000530339 ZNF493Q6ZR52 646 aa12.16□□□□□ -0.46
PCDHA4-203ENST00000530339 KNCNA6PVL3 124 aa12.16□□□□□ -0.46
PCDHA4-203ENST00000530339 SHISA9B4DS77 424 aa12.16□□□□□ -0.46
PCDHA4-203ENST00000530339 UBE2E2Q96LR5 201 aa12.16□□□□□ -0.46
PCDHA4-203ENST00000530339 GP9P14770 177 aa12.15□□□□□ -0.46
PCDHA4-203ENST00000530339 TEX48A0A1B0GUV7 120 aa12.15□□□□□ -0.46
PCDHA4-203ENST00000530339 UTF1Q5T230 341 aa12.15□□□□□ -0.46
PCDHA4-203ENST00000530339 IGFBPL1Q8WX77 278 aa12.15□□□□□ -0.46
PCDHA4-203ENST00000530339 PRSS29PA6NIE9 313 aa12.15□□□□□ -0.47
PCDHA4-203ENST00000530339 INS-IGF2F8WCM5 200 aa12.15□□□□□ -0.47
PCDHA4-203ENST00000530339 NPBQ8NG41 125 aa12.15□□□□□ -0.47
PCDHA4-203ENST00000530339 RHOHQ15669 191 aa12.14□□□□□ -0.47
PCDHA4-203ENST00000530339 GTF3C1Q12789 2109 aa12.14□□□□□ -0.47
PCDHA4-203ENST00000530339 SOCS3O14543 225 aa12.14□□□□□ -0.47
PCDHA4-203ENST00000530339 DEFB130BP0DP73 79 aa12.14□□□□□ -0.47
PCDHA4-203ENST00000530339 DEFB130AP0DP74 79 aa12.14□□□□□ -0.47
PCDHA4-203ENST00000530339 PATE2Q6UY27 113 aa12.14□□□□□ -0.47
PCDHA4-203ENST00000530339 DYNAPQ8N1N2 210 aa12.13□□□□□ -0.47
PCDHA4-203ENST00000530339 KLK9Q9UKQ9 250 aa12.13□□□□□ -0.47
PCDHA4-203ENST00000530339 CHD3Q12873 2000 aaKnown RBP12.13□□□□□ -0.47
PCDHA4-203ENST00000530339 IGLL5B9A064 214 aa12.13□□□□□ -0.47
PCDHA4-203ENST00000530339 FAM167A-AS1Q96KT0 104 aa12.13□□□□□ -0.47
PCDHA4-203ENST00000530339 AGPAT4-IT1Q9H0P7 198 aa12.13□□□□□ -0.47
PCDHA4-203ENST00000530339 EML6Q6ZMW3 1958 aa12.13□□□□□ -0.47
PCDHA4-203ENST00000530339 VWC2LB2RUY7 222 aa12.12□□□□□ -0.47
PCDHA4-203ENST00000530339 FOXI2Q6ZQN5 318 aa12.12□□□□□ -0.47
PCDHA4-203ENST00000530339 TAX1BP3O14907 124 aa12.12□□□□□ -0.47
PCDHA4-203ENST00000530339 NTN5Q8WTR8 489 aaPredicted RBP12.12□□□□□ -0.47
PCDHA4-203ENST00000530339 CARD19Q96LW7 228 aa12.12□□□□□ -0.47
PCDHA4-203ENST00000530339 TMEM243Q9BU79 118 aa12.12□□□□□ -0.47
PCDHA4-203ENST00000530339 F5H768 121 aa12.12□□□□□ -0.47
PCDHA4-203ENST00000530339 TCTEX1D4Q5JR98 221 aa12.12□□□□□ -0.47
PCDHA4-203ENST00000530339 CFC1BP0CG36 223 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 CFC1P0CG37 223 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 HERVK_113P63121 156 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 HOXB4P17483 251 aaPredicted RBP12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 GAGE12JA6NER3 117 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 GAGE7O76087 117 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 IGLV2-14P01704 120 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 GAGE12FP0CL80 117 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 GAGE12GP0CL81 117 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 GAGE12IP0CL82 117 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 GAGE4Q13068 117 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 RNF152Q8N8N0 203 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 CFHR4Q92496 578 aa12.11□□□□□ -0.47
PCDHA4-203ENST00000530339 MED13Q9UHV7 2174 aa12.1□□□□□ -0.47
PCDHA4-203ENST00000530339 SH2D6Q7Z4S9 175 aa12.1□□□□□ -0.47
PCDHA4-203ENST00000530339 GTSF1Q8WW33 167 aa12.1□□□□□ -0.47
PCDHA4-203ENST00000530339 FOXE3Q13461 319 aa12.1□□□□□ -0.47
PCDHA4-203ENST00000530339 COL4A3Q01955 1670 aa12.1□□□□□ -0.47
PCDHA4-203ENST00000530339 GATA1P15976 413 aaPredicted RBP12.1□□□□□ -0.47
PCDHA4-203ENST00000530339 PKIGQ9Y2B9 76 aa12.1□□□□□ -0.47
PCDHA4-203ENST00000530339 KMT2EQ8IZD2 1858 aa12.09□□□□□ -0.47
PCDHA4-203ENST00000530339 CTSZQ9UBR2 303 aa12.09□□□□□ -0.47
PCDHA4-203ENST00000530339 IGKV1-17P01599 117 aa12.09□□□□□ -0.47
PCDHA4-203ENST00000530339 MAPK1IP1LQ8NDC0 245 aa12.09□□□□□ -0.47
PCDHA4-203ENST00000530339 C22orf46C9J442 243 aa12.09□□□□□ -0.47
PCDHA4-203ENST00000530339 HIGD1BQ9P298 99 aa12.09□□□□□ -0.47
PCDHA4-203ENST00000530339 FRMD6-AS1P0C7T7 363 aa12.09□□□□□ -0.47
PCDHA4-203ENST00000530339 C15orf53Q8NAA6 179 aa12.09□□□□□ -0.47
PCDHA4-203ENST00000530339 XCL2Q9UBD3 114 aa12.08□□□□□ -0.48
PCDHA4-203ENST00000530339 TRAV12-2A0A075B6T6 113 aa12.08□□□□□ -0.48
PCDHA4-203ENST00000530339 DENND4AQ7Z401 1863 aa12.08□□□□□ -0.48
PCDHA4-203ENST00000530339 I3L2K1 104 aa12.08□□□□□ -0.48
PCDHA4-203ENST00000530339 TRAV13-2A0A0B4J235 113 aa12.08□□□□□ -0.48
PCDHA4-203ENST00000530339 ZNF561-AS1K7EIQ3 104 aa12.08□□□□□ -0.48
PCDHA4-203ENST00000530339 GAGE5Q13069 117 aa12.08□□□□□ -0.48
PCDHA4-203ENST00000530339 IGHV3-16A0A0C4DH30 117 aa12.07□□□□□ -0.48
PCDHA4-203ENST00000530339 IGKV1OR2-108A0A075B7D4 117 aa12.07□□□□□ -0.48
PCDHA4-203ENST00000530339 DEFB113Q30KQ7 82 aa12.07□□□□□ -0.48
PCDHA4-203ENST00000530339 TRBV6-1A0A0K0K1D8 114 aa12.07□□□□□ -0.48
PCDHA4-203ENST00000530339 K7EIM0 57 aa12.06□□□□□ -0.48
PCDHA4-203ENST00000530339 IGHG4P01861 327 aa12.06□□□□□ -0.48
PCDHA4-203ENST00000530339 FXYD2P54710 66 aa12.06□□□□□ -0.48
PCDHA4-203ENST00000530339 GAGE6Q13070 117 aa12.06□□□□□ -0.48
PCDHA4-203ENST00000530339 ANKRD29Q8N6D5 301 aa12.06□□□□□ -0.48
PCDHA4-203ENST00000530339 ZNRF2Q8NHG8 242 aa12.06□□□□□ -0.48
PCDHA4-203ENST00000530339 CENPVL3A0A0U1RRI6 287 aa12.05□□□□□ -0.48
PCDHA4-203ENST00000530339 PFN2P35080 140 aa12.05□□□□□ -0.48
PCDHA4-203ENST00000530339 Q71RC1 249 aaPredicted RBP12.05□□□□□ -0.48
PCDHA4-203ENST00000530339 UBL5Q9BZL1 73 aa12.05□□□□□ -0.48
PCDHA4-203ENST00000530339 MSRB1Q9NZV6 116 aa12.05□□□□□ -0.48
PCDHA4-203ENST00000530339 IGLV11-55A0A075B6I3 123 aa12.05□□□□□ -0.48
PCDHA4-203ENST00000530339 VPREB3Q9UKI3 123 aa12.05□□□□□ -0.48
PCDHA4-203ENST00000530339 IGHV3-38A0A0C4DH36 116 aa12.04□□□□□ -0.48
PCDHA4-203ENST00000530339 GNRH2O43555 120 aa12.04□□□□□ -0.48
PCDHA4-203ENST00000530339 PLCE1Q9P212 2302 aa12.04□□□□□ -0.48
PCDHA4-203ENST00000530339 SPRNQ5BIV9 151 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 86.3 ms