RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 IGHV3-49A0A0A0MS15 119 aa10.92□□□□□ -0.66
LIG1-202ENST00000427526 TCTAP57738 103 aa10.92□□□□□ -0.66
LIG1-202ENST00000427526 SRSF1Q07955 248 aaKnown RBP eCLIP10.92□□□□□ -0.663e-6■■■■□ 20.3
LIG1-202ENST00000427526 BRD3OSQ6XYD6 125 aa10.92□□□□□ -0.66
LIG1-202ENST00000427526 A1L4Q6 167 aa10.92□□□□□ -0.66
LIG1-202ENST00000427526 ZNF207O43670 478 aaKnown RBP10.92□□□□□ -0.66
LIG1-202ENST00000427526 TMEM78Q5T7P6 136 aa10.92□□□□□ -0.66
LIG1-202ENST00000427526 PCP2Q8IVA1 136 aa10.92□□□□□ -0.66
LIG1-202ENST00000427526 HHLA3Q9XRX5 114 aa10.92□□□□□ -0.66
LIG1-202ENST00000427526 TRGV3P03979 118 aa10.91□□□□□ -0.66
LIG1-202ENST00000427526 SMAGPQ0VAQ4 97 aa10.91□□□□□ -0.66
LIG1-202ENST00000427526 ODF1Q14990 250 aa10.91□□□□□ -0.66
LIG1-202ENST00000427526 C19orf54Q5BKX5 351 aa10.91□□□□□ -0.66
LIG1-202ENST00000427526 Q6ZQT7 251 aa10.91□□□□□ -0.66
LIG1-202ENST00000427526 Q8N8P6 123 aa10.91□□□□□ -0.66
LIG1-202ENST00000427526 HSD52Q0P140 79 aa10.9□□□□□ -0.66
LIG1-202ENST00000427526 GTSF1LQ9H1H1 148 aa10.9□□□□□ -0.66
LIG1-202ENST00000427526 CSMD2Q7Z408 3487 aa10.9□□□□□ -0.66
LIG1-202ENST00000427526 IGHV4-4A0A075B6R2 117 aa10.9□□□□□ -0.66
LIG1-202ENST00000427526 ATP5G2Q06055 141 aa10.9□□□□□ -0.66
LIG1-202ENST00000427526 OR4X2Q8NGF9 303 aa10.9□□□□□ -0.66
LIG1-202ENST00000427526 OR2K2Q8NGT1 345 aa10.9□□□□□ -0.66
LIG1-202ENST00000427526 TRAV40A0A0B4J280 105 aa10.9□□□□□ -0.67
LIG1-202ENST00000427526 H3BRM9 83 aa10.9□□□□□ -0.67
LIG1-202ENST00000427526 NMUP48645 174 aa10.9□□□□□ -0.67
LIG1-202ENST00000427526 CKS1BP61024 79 aa10.9□□□□□ -0.67
LIG1-202ENST00000427526 TMEM219Q86XT9 240 aa10.9□□□□□ -0.67
LIG1-202ENST00000427526 LRRK2Q5S007 2527 aa10.89□□□□□ -0.67
LIG1-202ENST00000427526 NRACQ8N912 160 aa10.89□□□□□ -0.67
LIG1-202ENST00000427526 TMEM158Q8WZ71 300 aa10.89□□□□□ -0.67
LIG1-202ENST00000427526 A6NDN8 102 aa10.89□□□□□ -0.67
LIG1-202ENST00000427526 PSMG4Q5JS54 123 aa10.89□□□□□ -0.67
LIG1-202ENST00000427526 IGHV1-69DA0A0B4J2H0 117 aa10.88□□□□□ -0.67
LIG1-202ENST00000427526 IGHV1-69P01742 117 aa10.88□□□□□ -0.67
LIG1-202ENST00000427526 IGHV4-38-2P0DP08 117 aa10.88□□□□□ -0.67
LIG1-202ENST00000427526 CRIP2P52943 208 aaPredicted RBP10.88□□□□□ -0.67
LIG1-202ENST00000427526 GLMPQ8WWB7 406 aa10.88□□□□□ -0.67
LIG1-202ENST00000427526 IGKV2D-26A0A0A0MRZ7 120 aa10.88□□□□□ -0.67
LIG1-202ENST00000427526 TRAV41A0A0B4J266 112 aa10.88□□□□□ -0.67
LIG1-202ENST00000427526 C9orf118A6NHY6 69 aa10.88□□□□□ -0.67
LIG1-202ENST00000427526 FBN2P35556 2912 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 SIGMAR1Q99720 223 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 FAM223BA6NKX1 122 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 PRSS1P07477 247 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 PRR9Q5T870 116 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 NEGR1Q7Z3B1 354 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 FAM223AQ8IWN6 122 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 C20orf173Q96LM9 149 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 MOB4Q9Y3A3 225 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 KIR3DS1Q14943 382 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 UFSP1Q6NVU6 142 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 C16orf92Q96LL3 132 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 PGPEP1Q9NXJ5 209 aa10.87□□□□□ -0.67
LIG1-202ENST00000427526 CENPEQ02224 2701 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 POLQO75417 2590 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 TRAV26-2A0A0B4J265 109 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 IGKCP01834 107 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 SMIM17P0DL12 118 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 LINC00527Q9UJ94 153 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 LENEPQ9Y5L5 61 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 GAGE10A6NGK3 116 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 ATP5LO75964 103 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 GPHB5Q86YW7 130 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 JMJD8Q96S16 334 aa10.86□□□□□ -0.67
LIG1-202ENST00000427526 UBR5O95071 2799 aaPredicted RBP10.85□□□□□ -0.67
LIG1-202ENST00000427526 MSMBP08118 114 aa10.85□□□□□ -0.67
LIG1-202ENST00000427526 C9orf139Q6ZV77 190 aa10.85□□□□□ -0.67
LIG1-202ENST00000427526 IGF1P05019 195 aa10.85□□□□□ -0.67
LIG1-202ENST00000427526 COX6B1P14854 86 aa10.85□□□□□ -0.67
LIG1-202ENST00000427526 LAGE3Q14657 143 aa10.85□□□□□ -0.67
LIG1-202ENST00000427526 FOXC2Q99958 501 aa10.85□□□□□ -0.67
LIG1-202ENST00000427526 HIGD1BQ9P298 99 aa10.85□□□□□ -0.67
LIG1-202ENST00000427526 AVPP01185 164 aa10.84□□□□□ -0.67
LIG1-202ENST00000427526 SPANXN1Q5VSR9 72 aa10.84□□□□□ -0.67
LIG1-202ENST00000427526 UNQ9165/PRO28630Q6UXU0 137 aa10.84□□□□□ -0.67
LIG1-202ENST00000427526 SELENOKQ9Y6D0 94 aa10.84□□□□□ -0.67
LIG1-202ENST00000427526 ARL3P36405 182 aa10.84□□□□□ -0.67
LIG1-202ENST00000427526 UFC1Q9Y3C8 167 aa10.84□□□□□ -0.67
LIG1-202ENST00000427526 H3BUT2 72 aa10.84□□□□□ -0.67
LIG1-202ENST00000427526 DPM2O94777 84 aa10.84□□□□□ -0.67
LIG1-202ENST00000427526 TRBV12-3P01733 135 aa10.84□□□□□ -0.67
LIG1-202ENST00000427526 TTTY13Q9BZ97 58 aa10.84□□□□□ -0.67
LIG1-202ENST00000427526 SOCS3O14543 225 aa10.83□□□□□ -0.68
LIG1-202ENST00000427526 LY6EQ16553 131 aa10.83□□□□□ -0.68
LIG1-202ENST00000427526 ZFAND2AQ8N6M9 145 aa10.83□□□□□ -0.68
LIG1-202ENST00000427526 LINC00477Q96M19 166 aa10.83□□□□□ -0.68
LIG1-202ENST00000427526 A0A0G2JLM5 398 aa10.83□□□□□ -0.68
LIG1-202ENST00000427526 H3BVH4 76 aa10.83□□□□□ -0.68
LIG1-202ENST00000427526 MAPK1IP1LQ8NDC0 245 aa10.83□□□□□ -0.68
LIG1-202ENST00000427526 KRTAP10-9P60411 292 aa10.82□□□□□ -0.68
LIG1-202ENST00000427526 ZC2HC1BQ5TFG8 222 aa10.82□□□□□ -0.68
LIG1-202ENST00000427526 GTSCR1Q86UQ5 136 aa10.82□□□□□ -0.68
LIG1-202ENST00000427526 MRAP2Q96G30 205 aa10.82□□□□□ -0.68
LIG1-202ENST00000427526 AP1S3Q96PC3 154 aa10.82□□□□□ -0.68
LIG1-202ENST00000427526 USP9YO00507 2555 aaPredicted RBP10.82□□□□□ -0.68
LIG1-202ENST00000427526 J3KRW8 73 aa10.82□□□□□ -0.68
LIG1-202ENST00000427526 NDUFA4O00483 81 aa10.82□□□□□ -0.68
LIG1-202ENST00000427526 MYOZ3Q8TDC0 251 aa10.82□□□□□ -0.68
LIG1-202ENST00000427526 HLA-DRB4P13762 266 aa10.82□□□□□ -0.68
LIG1-202ENST00000427526 GTF2H5Q6ZYL4 71 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 316.4 ms