RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 C19orf71A6NCJ1 209 aa10.44□□□□□ -0.74
SKA1-202ENST00000398452 RBMY1BA6NDE4 496 aaKnown RBP10.44□□□□□ -0.74
SKA1-202ENST00000398452 RBMY1EA6NEQ0 496 aaKnown RBP10.44□□□□□ -0.74
SKA1-202ENST00000398452 RBMY1DP0C7P1 496 aaKnown RBP10.44□□□□□ -0.74
SKA1-202ENST00000398452 ZNF80P51504 273 aaPredicted RBP10.44□□□□□ -0.74
SKA1-202ENST00000398452 RPL19P84098 196 aaKnown RBP10.44□□□□□ -0.74
SKA1-202ENST00000398452 LINC01587Q99440 93 aa10.44□□□□□ -0.74
SKA1-202ENST00000398452 TMSB15BA0A087X1C1 80 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 KIR2DL5BA0A0G2JN68 375 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 KIR2DL5BA0A0G2JPC4 375 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 IGHV4-30-4P0DP06 118 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 S100A4P26447 101 aaKnown RBP10.43□□□□□ -0.74
SKA1-202ENST00000398452 CRIP1P50238 77 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 CT83Q5H943 113 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 PRR9Q5T870 116 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 KIR2DL5AQ8N109 375 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 TMEM256Q8N2U0 113 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 KIR2DL5BQ8NHK3 375 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 BORCS7Q96B45 105 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 TMEM242Q9NWH2 141 aa10.43□□□□□ -0.74
SKA1-202ENST00000398452 IGHV3OR16-12A0A075B7B8 117 aa10.42□□□□□ -0.74
SKA1-202ENST00000398452 UBE2CO00762 179 aa10.42□□□□□ -0.74
SKA1-202ENST00000398452 MUC21Q5SSG8 566 aa10.42□□□□□ -0.74
SKA1-202ENST00000398452 LINC00322Q6ZN03 302 aaPredicted RBP10.42□□□□□ -0.74
SKA1-202ENST00000398452 PYGO2Q9BRQ0 406 aa10.42□□□□□ -0.74
SKA1-202ENST00000398452 SMCO4Q9NRQ5 59 aa10.42□□□□□ -0.74
SKA1-202ENST00000398452 TRGV11A0A075B6L2 103 aa10.41□□□□□ -0.74
SKA1-202ENST00000398452 IGHV1OR15-1A0A075B7D0 117 aa10.41□□□□□ -0.74
SKA1-202ENST00000398452 CXorf65A6NEN9 183 aa10.41□□□□□ -0.74
SKA1-202ENST00000398452 CBY3A6NI87 242 aa10.41□□□□□ -0.74
SKA1-202ENST00000398452 HTN1P15515 57 aa10.41□□□□□ -0.74
SKA1-202ENST00000398452 KIR3DS1Q14943 382 aa10.41□□□□□ -0.74
SKA1-202ENST00000398452 TSKUQ8WUA8 353 aa10.41□□□□□ -0.74
SKA1-202ENST00000398452 IL36BQ9NZH7 164 aa10.41□□□□□ -0.74
SKA1-202ENST00000398452 V9GYV3 84 aa10.41□□□□□ -0.74
SKA1-202ENST00000398452 PRKDCP78527 4128 aaKnown RBP10.4□□□□□ -0.74
SKA1-202ENST00000398452 CRXO43186 299 aaPredicted RBP10.4□□□□□ -0.74
SKA1-202ENST00000398452 ASIPP42127 132 aa10.4□□□□□ -0.74
SKA1-202ENST00000398452 ANXA2RQ3ZCQ2 193 aa10.4□□□□□ -0.74
SKA1-202ENST00000398452 ATRAIDQ6UW56 229 aa10.4□□□□□ -0.74
SKA1-202ENST00000398452 BTF3L4Q96K17 158 aa10.4□□□□□ -0.74
SKA1-202ENST00000398452 IMMP2LQ96T52 175 aa10.4□□□□□ -0.74
SKA1-202ENST00000398452 TPPP3Q9BW30 176 aa10.4□□□□□ -0.74
SKA1-202ENST00000398452 GFRA4Q9GZZ7 299 aa10.4□□□□□ -0.74
SKA1-202ENST00000398452 NAT8BQ9UHF3 227 aa10.4□□□□□ -0.74
SKA1-202ENST00000398452 AGRNO00468 2067 aa10.4□□□□□ -0.75
SKA1-202ENST00000398452 A0A1W2PPQ1 181 aa10.39□□□□□ -0.75
SKA1-202ENST00000398452 FAM231BA6NCW3 169 aa10.39□□□□□ -0.75
SKA1-202ENST00000398452 A8MZ25 164 aa10.39□□□□□ -0.75
SKA1-202ENST00000398452 ZNF324O75467 553 aaPredicted RBP10.39□□□□□ -0.75
SKA1-202ENST00000398452 DEFB121Q5J5C9 76 aa10.39□□□□□ -0.75
SKA1-202ENST00000398452 KPRPQ5T749 579 aaPredicted RBP10.39□□□□□ -0.75
SKA1-202ENST00000398452 GRIFINA4D1Z8 144 aa10.38□□□□□ -0.75
SKA1-202ENST00000398452 CXCL1P09341 107 aa10.38□□□□□ -0.75
SKA1-202ENST00000398452 TCL1AP56279 114 aa10.38□□□□□ -0.75
SKA1-202ENST00000398452 FER1L6-AS1Q8NA97 138 aa10.38□□□□□ -0.75
SKA1-202ENST00000398452 IGKV3D-20A0A0C4DH25 116 aa10.37□□□□□ -0.75
SKA1-202ENST00000398452 ZNF415Q09FC8 603 aa10.37□□□□□ -0.75
SKA1-202ENST00000398452 MRAPQ8TCY5 172 aa10.37□□□□□ -0.75
SKA1-202ENST00000398452 RCHY1Q96PM5 261 aa10.37□□□□□ -0.75
SKA1-202ENST00000398452 NEU1Q99519 415 aa10.37□□□□□ -0.75
SKA1-202ENST00000398452 TIMM8BQ9Y5J9 83 aaPredicted RBP10.37□□□□□ -0.75
SKA1-202ENST00000398452 URGCP-MRPS24S4R325 110 aa10.37□□□□□ -0.75
SKA1-202ENST00000398452 TRAV9-1A0A075B6T8 112 aa10.36□□□□□ -0.75
SKA1-202ENST00000398452 HIGD1CA8MV81 97 aa10.36□□□□□ -0.75
SKA1-202ENST00000398452 F2Z2F3 143 aa10.36□□□□□ -0.75
SKA1-202ENST00000398452 GZMBP10144 247 aa10.36□□□□□ -0.75
SKA1-202ENST00000398452 RRN3P1Q2M238 152 aa10.36□□□□□ -0.75
SKA1-202ENST00000398452 TDRG1Q3Y452 100 aa10.36□□□□□ -0.75
SKA1-202ENST00000398452 TMEM88Q6PEY1 159 aa10.36□□□□□ -0.75
SKA1-202ENST00000398452 LINC00467Q9BRT7 94 aa10.36□□□□□ -0.75
SKA1-202ENST00000398452 SMIM27A0A1W2PRY6 76 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 SCO1O75880 301 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 TYMSP04818 313 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 FRMD6-AS1P0C7T7 363 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 FAM3BP58499 235 aaPredicted RBP10.35□□□□□ -0.75
SKA1-202ENST00000398452 Q6ZQT7 251 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 Q6ZWC4 215 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 CBLN2Q8IUK8 224 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 C1orf158Q8N1D5 194 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 PGLYRP4Q96LB8 373 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 C11orf21Q9P2W6 132 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 PHLDA3Q9Y5J5 127 aa10.35□□□□□ -0.75
SKA1-202ENST00000398452 SMIM9A6NGZ8 99 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 SNURFLB1AK76 121 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 H3BVH4 76 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 GNRH2O43555 120 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 S100A8P05109 93 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 RBMY1A1P0DJD3 496 aaKnown RBP10.34□□□□□ -0.75
SKA1-202ENST00000398452 RBMY1CP0DJD4 496 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 MED14OSP0DP75 135 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 CACNG7P62955 275 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 RIGQ13278 110 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 RBMY1FQ15415 496 aaKnown RBP10.34□□□□□ -0.75
SKA1-202ENST00000398452 DEFB135Q30KP9 77 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 SPANXN1Q5VSR9 72 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 SYT8Q8NBV8 401 aa10.34□□□□□ -0.75
SKA1-202ENST00000398452 TMA7Q9Y2S6 64 aaKnown RBP10.34□□□□□ -0.75
SKA1-202ENST00000398452 A0A1B0GUT8 65 aa10.33□□□□□ -0.76
SKA1-202ENST00000398452 GIG44P09565 113 aaPredicted RBP10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms