RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 FOSL1P15407 271 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 PSMG4Q5JS54 123 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 CELSR1Q9NYQ6 3014 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 TRAV26-2A0A0B4J265 109 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 MED14OSP0DP75 135 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 LCNL1Q6ZST4 164 aa16.74■□□□□ 0.27
UPF3A-201ENST00000351487 OR9G4Q8NGQ1 327 aa16.73■□□□□ 0.27
UPF3A-201ENST00000351487 SPG11Q96JI7 2443 aa16.73■□□□□ 0.27
UPF3A-201ENST00000351487 SIVA1O15304 175 aa16.73■□□□□ 0.27
UPF3A-201ENST00000351487 COL12A1Q99715 3063 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 K7EMT4 169 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 DEFB1P60022 68 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 RPL11P62913 178 aaKnown RBP16.72■□□□□ 0.27
UPF3A-201ENST00000351487 LAGE3Q14657 143 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 TM4SF20Q53R12 229 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 TMEM97Q5BJF2 176 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 SMPXQ9UHP9 88 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 J3KRW8 73 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 ATP5LO75964 103 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 SEC11AP67812 179 aa16.72■□□□□ 0.27
UPF3A-201ENST00000351487 ASIPP42127 132 aa16.71■□□□□ 0.27
UPF3A-201ENST00000351487 PEF1Q9UBV8 284 aaKnown RBP16.71■□□□□ 0.27
UPF3A-201ENST00000351487 SMIM17P0DL12 118 aa16.7■□□□□ 0.26
UPF3A-201ENST00000351487 SLC25A16P16260 332 aa16.7■□□□□ 0.26
UPF3A-201ENST00000351487 VPS13CQ709C8 3753 aa16.7■□□□□ 0.26
UPF3A-201ENST00000351487 ANXA2RQ3ZCQ2 193 aa16.7■□□□□ 0.26
UPF3A-201ENST00000351487 HHLA3Q9XRX5 114 aa16.7■□□□□ 0.26
UPF3A-201ENST00000351487 F6UB75 175 aa16.69■□□□□ 0.26
UPF3A-201ENST00000351487 PRSS1P07477 247 aa16.69■□□□□ 0.26
UPF3A-201ENST00000351487 PSMB8P28062 276 aa16.69■□□□□ 0.26
UPF3A-201ENST00000351487 USP9XQ93008 2570 aaPredicted RBP16.69■□□□□ 0.26
UPF3A-201ENST00000351487 KIR3DS1Q14943 382 aa16.69■□□□□ 0.26
UPF3A-201ENST00000351487 A1L4Q6 167 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 S100A4P26447 101 aaKnown RBP16.68■□□□□ 0.26
UPF3A-201ENST00000351487 SAMD13Q5VXD3 122 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 SMIM2Q9BVW6 85 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 DPH3P1Q9H4G8 78 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 M0R381 172 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 SRSF1Q07955 248 aaKnown RBP eCLIP16.68■□□□□ 0.263e-6■□□□□ 11.2
UPF3A-201ENST00000351487 VAMP3Q15836 100 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 FOXC2Q99958 501 aa16.68■□□□□ 0.26
UPF3A-201ENST00000351487 IGKCP01834 107 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 RNASE4P34096 147 aaKnown RBP16.67■□□□□ 0.26
UPF3A-201ENST00000351487 NMUP48645 174 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 HSD52Q0P140 79 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 TMEM95Q3KNT9 176 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 ADAMTSL5Q6ZMM2 481 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 PCP2Q8IVA1 136 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 PHLDA3Q9Y5J5 127 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 IGSF10Q6WRI0 2623 aa16.67■□□□□ 0.26
UPF3A-201ENST00000351487 IGKV3-7A0A075B6H7 116 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 TCTAP57738 103 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 LINC01356Q8N9X3 169 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 DEFB112Q30KQ8 113 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 NRGNQ92686 78 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 FLNCQ14315 2725 aa16.66■□□□□ 0.26
UPF3A-201ENST00000351487 A0A096LNT2 108 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 KLLNB2CW77 178 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 DPM2O94777 84 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 IGHV4-59P01825 116 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 MYOZ3Q8TDC0 251 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 DCANP1Q8TF63 244 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 C20orf78Q9BR46 151 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 TMEM89A2RUT3 159 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 NXPH4O95158 308 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 RNASE3P12724 160 aaKnown RBP16.65■□□□□ 0.26
UPF3A-201ENST00000351487 RASL10AQ92737 203 aa16.65■□□□□ 0.26
UPF3A-201ENST00000351487 CBY3A6NI87 242 aa16.64■□□□□ 0.25
UPF3A-201ENST00000351487 EDN2P20800 178 aa16.64■□□□□ 0.25
UPF3A-201ENST00000351487 ID1P41134 155 aa16.64■□□□□ 0.25
UPF3A-201ENST00000351487 SUMO2P61956 95 aaKnown RBP16.64■□□□□ 0.25
UPF3A-201ENST00000351487 CSPG4Q6UVK1 2322 aa16.64■□□□□ 0.25
UPF3A-201ENST00000351487 K7EMI3 77 aa16.64■□□□□ 0.25
UPF3A-201ENST00000351487 J3QLI3 93 aa16.63■□□□□ 0.25
UPF3A-201ENST00000351487 IGKV2D-26A0A0A0MRZ7 120 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 C7orf71A4D174 169 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 ERASQ7Z444 233 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 C14orf178Q8N769 122 aaPredicted RBP16.62■□□□□ 0.25
UPF3A-201ENST00000351487 AP1S3Q96PC3 154 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 GNRH2O43555 120 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 HLA-DRB4P13762 266 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 SRD5A1P18405 259 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 ORMDL2Q53FV1 153 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 OR4C5Q8NGB2 326 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 HLA-DRB4X5D2U9 266 aa16.62■□□□□ 0.25
UPF3A-201ENST00000351487 A6NDN8 102 aa16.61■□□□□ 0.25
UPF3A-201ENST00000351487 SPRY2O43597 315 aa16.61■□□□□ 0.25
UPF3A-201ENST00000351487 POM121L12Q8N7R1 296 aa16.61■□□□□ 0.25
UPF3A-201ENST00000351487 A0A087WX48 190 aa16.61■□□□□ 0.25
UPF3A-201ENST00000351487 MRPL35Q9NZE8 188 aaKnown RBP16.61■□□□□ 0.25
UPF3A-201ENST00000351487 HIGD1BQ9P298 99 aa16.61■□□□□ 0.25
UPF3A-201ENST00000351487 ZC2HC1BQ5TFG8 222 aa16.6■□□□□ 0.25
UPF3A-201ENST00000351487 MUC4Q99102 2169 aa16.6■□□□□ 0.25
UPF3A-201ENST00000351487 RNF223E7ERA6 249 aa16.6■□□□□ 0.25
UPF3A-201ENST00000351487 K7EP13 123 aa16.6■□□□□ 0.25
UPF3A-201ENST00000351487 SELENOKQ9Y6D0 94 aa16.6■□□□□ 0.25
UPF3A-201ENST00000351487 RPL39LQ96EH5 51 aaKnown RBP16.59■□□□□ 0.25
UPF3A-201ENST00000351487 TRAV12-1A0A0B4J245 112 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 TRAV8-6A0A0B4J262 113 aa16.58■□□□□ 0.25
UPF3A-201ENST00000351487 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.58■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 117 ms