RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 NFE4Q86UQ8 179 aa8.22□□□□□ -1.09
UPF3B-204ENST00000619445 PTTG2Q9NZH5 202 aa8.22□□□□□ -1.09
UPF3B-204ENST00000619445 ZNF266Q14584 549 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 KHDC3LQ587J8 217 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 FAM74A1Q5RGS3 127 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 ARL6IP6Q8N6S5 226 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 MAPKAPK5-AS1Q8N8E1 139 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 TMED6Q8WW62 240 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 FXYD5Q96DB9 178 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 ATP5SQ99766 215 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 SPXQ9BT56 116 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 KRTAP1-5Q9BYS1 174 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 HHLA3Q9XRX5 114 aa8.21□□□□□ -1.1
UPF3B-204ENST00000619445 TRGV11A0A075B6L2 103 aa8.2□□□□□ -1.1
UPF3B-204ENST00000619445 UPK1BO75841 260 aa8.2□□□□□ -1.1
UPF3B-204ENST00000619445 IFNA5P01569 189 aa8.2□□□□□ -1.1
UPF3B-204ENST00000619445 UBE2L3P68036 154 aaKnown RBP8.2□□□□□ -1.1
UPF3B-204ENST00000619445 LRRC37A5PQ49AS3 106 aa8.2□□□□□ -1.1
UPF3B-204ENST00000619445 NEGR1Q7Z3B1 354 aa8.2□□□□□ -1.1
UPF3B-204ENST00000619445 IQCF2Q8IXL9 164 aa8.2□□□□□ -1.1
UPF3B-204ENST00000619445 SCGB1C1Q8TD33 95 aa8.2□□□□□ -1.1
UPF3B-204ENST00000619445 INMT-MINDY4F8WBC2 141 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 NXPH4O95158 308 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 ORM1P02763 201 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 OR10J4P0C629 311 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 CRYBA4P53673 196 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 LINC00315P59091 139 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 RANP62826 216 aaKnown RBP8.19□□□□□ -1.1
UPF3B-204ENST00000619445 CDPF1Q6NVV7 123 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 FAM159AQ6UWV7 190 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 Q8N1X5 172 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 PCNPQ8WW12 178 aaKnown RBP8.19□□□□□ -1.1
UPF3B-204ENST00000619445 PHYHIPLQ96FC7 376 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 PGPEP1Q9NXJ5 209 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 OR5AC2Q9NZP5 309 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 TP53TG3Q9ULZ0 132 aa8.19□□□□□ -1.1
UPF3B-204ENST00000619445 HSPG2P98160 4391 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 LRP1BQ9NZR2 4599 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 TRGV4A0A0C4DH28 118 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 SIX6O95475 246 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 DEFA1P59665 94 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 DEFA3P59666 94 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 ERVFC1-1P60608 527 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 FFAR4Q5NUL3 377 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 Q6AWC8 147 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 SH2D6Q7Z4S9 175 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 OR10G4Q8NGN3 311 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 CMTM2Q8TAZ6 248 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 PPP1R1CQ8WVI7 109 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 RASL10AQ92737 203 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 TXNDC17Q9BRA2 123 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 MRPL16Q9NX20 251 aaKnown RBP8.18□□□□□ -1.1
UPF3B-204ENST00000619445 HSPB11Q9Y547 144 aa8.18□□□□□ -1.1
UPF3B-204ENST00000619445 DIRC3C9JPN6 131 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 H0YIZ8 118 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 SRIP30626 198 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 FHL2Q14192 279 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 TDRG1Q3Y452 100 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 PRR9Q5T870 116 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 PQLC2Q6ZP29 291 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 Q8TAT8 98 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 MARVELD1Q9BSK0 173 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 OTORQ9NRC9 128 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 LY96Q9Y6Y9 160 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 ABCA13Q86UQ4 5058 aa8.17□□□□□ -1.1
UPF3B-204ENST00000619445 C9JCJ5 164 aa8.16□□□□□ -1.1
UPF3B-204ENST00000619445 SSNA1O43805 119 aa8.16□□□□□ -1.1
UPF3B-204ENST00000619445 MPC2O95563 127 aa8.16□□□□□ -1.1
UPF3B-204ENST00000619445 IGHV3-53P01767 116 aa8.16□□□□□ -1.1
UPF3B-204ENST00000619445 EVI2AP22794 236 aa8.16□□□□□ -1.1
UPF3B-204ENST00000619445 ACOT6Q3I5F7 207 aaPredicted RBP8.16□□□□□ -1.1
UPF3B-204ENST00000619445 LYPD5Q6UWN5 251 aa8.16□□□□□ -1.1
UPF3B-204ENST00000619445 C10orf126Q8N4M7 172 aa8.16□□□□□ -1.1
UPF3B-204ENST00000619445 C8orf49Q96NF6 230 aa8.16□□□□□ -1.1
UPF3B-204ENST00000619445 TRAV21A0A0B4J279 112 aa8.15□□□□□ -1.1
UPF3B-204ENST00000619445 SERTM2A0A1B0GWG4 89 aa8.15□□□□□ -1.1
UPF3B-204ENST00000619445 A0A1W2PPV4 95 aa8.15□□□□□ -1.1
UPF3B-204ENST00000619445 CIDEAO60543 219 aa8.15□□□□□ -1.1
UPF3B-204ENST00000619445 RPL12P30050 165 aaKnown RBP8.15□□□□□ -1.1
UPF3B-204ENST00000619445 H2BFSP57053 126 aa8.15□□□□□ -1.1
UPF3B-204ENST00000619445 TMEM183BQ1AE95 376 aa8.15□□□□□ -1.1
UPF3B-204ENST00000619445 MUC21Q5SSG8 566 aa8.15□□□□□ -1.1
UPF3B-204ENST00000619445 Q6ZRN7 208 aaPredicted RBP8.15□□□□□ -1.1
UPF3B-204ENST00000619445 TMEM183AQ8IXX5 376 aa8.15□□□□□ -1.1
UPF3B-204ENST00000619445 KCNS1Q96KK3 526 aa8.15□□□□□ -1.1
UPF3B-204ENST00000619445 TRAV4A0A0B4J268 109 aa8.14□□□□□ -1.11
UPF3B-204ENST00000619445 M0R2P5 195 aa8.14□□□□□ -1.11
UPF3B-204ENST00000619445 KRTAP10-2P60368 255 aa8.14□□□□□ -1.11
UPF3B-204ENST00000619445 NDFIP1Q9BT67 221 aa8.14□□□□□ -1.11
UPF3B-204ENST00000619445 KRTAP4-5Q9BYR2 181 aa8.14□□□□□ -1.11
UPF3B-204ENST00000619445 SCRT2Q9NQ03 307 aa8.14□□□□□ -1.11
UPF3B-204ENST00000619445 MDFICQ9P1T7 246 aa8.14□□□□□ -1.11
UPF3B-204ENST00000619445 MBD2Q9UBB5 411 aa8.14□□□□□ -1.11
UPF3B-204ENST00000619445 PGPA6NDG6 321 aa8.13□□□□□ -1.11
UPF3B-204ENST00000619445 K7EQD1 137 aa8.13□□□□□ -1.11
UPF3B-204ENST00000619445 GYPEP15421 78 aa8.13□□□□□ -1.11
UPF3B-204ENST00000619445 TIRAPP58753 221 aa8.13□□□□□ -1.11
UPF3B-204ENST00000619445 OR4C5Q8NGB2 326 aa8.13□□□□□ -1.11
UPF3B-204ENST00000619445 HYLS1Q96M11 299 aa8.13□□□□□ -1.11
UPF3B-204ENST00000619445 SDF2L1Q9HCN8 221 aa8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms