RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 SFTPCP11686 197 aa17.43■□□□□ 0.38
VPS53-211ENST00000571805 PPP1R14DQ9NXH3 145 aa17.43■□□□□ 0.38
VPS53-211ENST00000571805 IGHV1-69DA0A0B4J2H0 117 aa17.43■□□□□ 0.38
VPS53-211ENST00000571805 FAM223BA6NKX1 122 aa17.43■□□□□ 0.38
VPS53-211ENST00000571805 IGHV1-69P01742 117 aa17.43■□□□□ 0.38
VPS53-211ENST00000571805 FAM223AQ8IWN6 122 aa17.43■□□□□ 0.38
VPS53-211ENST00000571805 GATA1P15976 413 aaPredicted RBP17.42■□□□□ 0.38
VPS53-211ENST00000571805 GNLYP22749 145 aa17.42■□□□□ 0.38
VPS53-211ENST00000571805 IGHV7-4-1A0A0J9YVY3 117 aa17.42■□□□□ 0.38
VPS53-211ENST00000571805 Q6ZQT7 251 aa17.42■□□□□ 0.38
VPS53-211ENST00000571805 GLMPQ8WWB7 406 aa17.42■□□□□ 0.38
VPS53-211ENST00000571805 VPS13CQ709C8 3753 aa17.41■□□□□ 0.38
VPS53-211ENST00000571805 EVI2AP22794 236 aa17.41■□□□□ 0.38
VPS53-211ENST00000571805 BRD3OSQ6XYD6 125 aa17.41■□□□□ 0.38
VPS53-211ENST00000571805 NXT2Q9NPJ8 142 aaKnown RBP17.41■□□□□ 0.38
VPS53-211ENST00000571805 CD5LO43866 347 aa17.4■□□□□ 0.38
VPS53-211ENST00000571805 WFDC3Q8IUB2 231 aa17.4■□□□□ 0.38
VPS53-211ENST00000571805 BOD1L2Q8IYS8 172 aa17.4■□□□□ 0.38
VPS53-211ENST00000571805 TRGV3P03979 118 aa17.4■□□□□ 0.38
VPS53-211ENST00000571805 FCER1GP30273 86 aa17.4■□□□□ 0.38
VPS53-211ENST00000571805 ERASQ7Z444 233 aa17.4■□□□□ 0.38
VPS53-211ENST00000571805 LEPP41159 167 aa17.39■□□□□ 0.38
VPS53-211ENST00000571805 MEGF9Q9H1U4 602 aa17.39■□□□□ 0.38
VPS53-211ENST00000571805 DKK2Q9UBU2 259 aa17.39■□□□□ 0.38
VPS53-211ENST00000571805 C16orf92Q96LL3 132 aa17.39■□□□□ 0.37
VPS53-211ENST00000571805 C20orf173Q96LM9 149 aa17.39■□□□□ 0.37
VPS53-211ENST00000571805 CELSR1Q9NYQ6 3014 aa17.39■□□□□ 0.37
VPS53-211ENST00000571805 IGLV2-18A0A075B6J9 118 aa17.38■□□□□ 0.37
VPS53-211ENST00000571805 ARL3P36405 182 aa17.38■□□□□ 0.37
VPS53-211ENST00000571805 VAMP3Q15836 100 aa17.38■□□□□ 0.37
VPS53-211ENST00000571805 C18orf15Q96N68 181 aa17.38■□□□□ 0.37
VPS53-211ENST00000571805 IGHV4-61A0A0C4DH41 118 aa17.38■□□□□ 0.37
VPS53-211ENST00000571805 TMEM97Q5BJF2 176 aa17.38■□□□□ 0.37
VPS53-211ENST00000571805 TRAV40A0A0B4J280 105 aa17.37■□□□□ 0.37
VPS53-211ENST00000571805 TRBV12-3P01733 135 aa17.37■□□□□ 0.37
VPS53-211ENST00000571805 UNQ9165/PRO28630Q6UXU0 137 aa17.37■□□□□ 0.37
VPS53-211ENST00000571805 IGHV4-4A0A075B6R2 117 aa17.37■□□□□ 0.37
VPS53-211ENST00000571805 SMAD7O15105 426 aaKnown RBP17.37■□□□□ 0.37
VPS53-211ENST00000571805 IGF1P05019 195 aa17.37■□□□□ 0.37
VPS53-211ENST00000571805 PRR9Q5T870 116 aa17.37■□□□□ 0.37
VPS53-211ENST00000571805 GPHB5Q86YW7 130 aa17.37■□□□□ 0.37
VPS53-211ENST00000571805 Q8N8P6 123 aa17.37■□□□□ 0.37
VPS53-211ENST00000571805 C9orf139Q6ZV77 190 aa17.36■□□□□ 0.37
VPS53-211ENST00000571805 CBY3A6NI87 242 aa17.36■□□□□ 0.37
VPS53-211ENST00000571805 TCTAP57738 103 aa17.36■□□□□ 0.37
VPS53-211ENST00000571805 OR2K2Q8NGT1 345 aa17.36■□□□□ 0.37
VPS53-211ENST00000571805 ZMAT4Q9H898 229 aa17.35■□□□□ 0.37
VPS53-211ENST00000571805 PRSS47A8MTI9 375 aa17.35■□□□□ 0.37
VPS53-211ENST00000571805 NRACQ8N912 160 aa17.35■□□□□ 0.37
VPS53-211ENST00000571805 LENEPQ9Y5L5 61 aa17.35■□□□□ 0.37
VPS53-211ENST00000571805 IGHV4-38-2P0DP08 117 aa17.34■□□□□ 0.37
VPS53-211ENST00000571805 NDUFA4O00483 81 aa17.33■□□□□ 0.37
VPS53-211ENST00000571805 ODF1Q14990 250 aa17.33■□□□□ 0.37
VPS53-211ENST00000571805 TMEM158Q8WZ71 300 aa17.33■□□□□ 0.37
VPS53-211ENST00000571805 PIMREGQ9BSJ6 248 aa17.33■□□□□ 0.37
VPS53-211ENST00000571805 K7EP13 123 aa17.33■□□□□ 0.36
VPS53-211ENST00000571805 SEC11AP67812 179 aa17.33■□□□□ 0.36
VPS53-211ENST00000571805 OR4C5Q8NGB2 326 aa17.33■□□□□ 0.36
VPS53-211ENST00000571805 SOCS3O14543 225 aa17.32■□□□□ 0.36
VPS53-211ENST00000571805 SIVA1O15304 175 aa17.32■□□□□ 0.36
VPS53-211ENST00000571805 BRI3O95415 125 aa17.32■□□□□ 0.36
VPS53-211ENST00000571805 SMIM15Q7Z3B0 74 aa17.32■□□□□ 0.36
VPS53-211ENST00000571805 OR9G4Q8NGQ1 327 aa17.32■□□□□ 0.36
VPS53-211ENST00000571805 C10orf105Q8TEF2 133 aa17.32■□□□□ 0.36
VPS53-211ENST00000571805 IGHG2P01859 326 aa17.32■□□□□ 0.36
VPS53-211ENST00000571805 PCP2Q8IVA1 136 aa17.32■□□□□ 0.36
VPS53-211ENST00000571805 TRAV26-2A0A0B4J265 109 aa17.31■□□□□ 0.36
VPS53-211ENST00000571805 LY6EQ16553 131 aa17.31■□□□□ 0.36
VPS53-211ENST00000571805 SPANXN1Q5VSR9 72 aa17.31■□□□□ 0.36
VPS53-211ENST00000571805 LINC00477Q96M19 166 aa17.31■□□□□ 0.36
VPS53-211ENST00000571805 HHLA3Q9XRX5 114 aa17.31■□□□□ 0.36
VPS53-211ENST00000571805 A1L4Q6 167 aa17.31■□□□□ 0.36
VPS53-211ENST00000571805 AMMECR1LQ6DCA0 310 aa17.31■□□□□ 0.36
VPS53-211ENST00000571805 RNASE8Q8TDE3 154 aaKnown RBP17.31■□□□□ 0.36
VPS53-211ENST00000571805 UFC1Q9Y3C8 167 aa17.31■□□□□ 0.36
VPS53-211ENST00000571805 SPTAN1Q13813 2472 aaKnown RBP17.3■□□□□ 0.36
VPS53-211ENST00000571805 ADAMTSL5Q6ZMM2 481 aa17.3■□□□□ 0.36
VPS53-211ENST00000571805 ZFAND2AQ8N6M9 145 aa17.3■□□□□ 0.36
VPS53-211ENST00000571805 A6NDX4 124 aa17.3■□□□□ 0.36
VPS53-211ENST00000571805 H3BVH4 76 aa17.3■□□□□ 0.36
VPS53-211ENST00000571805 USMG5Q96IX5 58 aa17.3■□□□□ 0.36
VPS53-211ENST00000571805 C7orf71A4D174 169 aa17.29■□□□□ 0.36
VPS53-211ENST00000571805 H3BUA1 57 aa17.29■□□□□ 0.36
VPS53-211ENST00000571805 PRSS1P07477 247 aa17.29■□□□□ 0.36
VPS53-211ENST00000571805 NMUP48645 174 aa17.29■□□□□ 0.36
VPS53-211ENST00000571805 KLK15Q9H2R5 256 aa17.29■□□□□ 0.36
VPS53-211ENST00000571805 TRAV8-6A0A0B4J262 113 aa17.29■□□□□ 0.36
VPS53-211ENST00000571805 H3BUX3 64 aa17.29■□□□□ 0.36
VPS53-211ENST00000571805 OVOL1O14753 267 aa17.28■□□□□ 0.36
VPS53-211ENST00000571805 IGHV3-11P01762 117 aa17.28■□□□□ 0.36
VPS53-211ENST00000571805 CCL19Q99731 98 aa17.28■□□□□ 0.36
VPS53-211ENST00000571805 SMIM17P0DL12 118 aa17.28■□□□□ 0.36
VPS53-211ENST00000571805 DEFB1P60022 68 aa17.28■□□□□ 0.36
VPS53-211ENST00000571805 HSD52Q0P140 79 aa17.28■□□□□ 0.36
VPS53-211ENST00000571805 OR4X2Q8NGF9 303 aa17.28■□□□□ 0.36
VPS53-211ENST00000571805 PEF1Q9UBV8 284 aaKnown RBP17.28■□□□□ 0.36
VPS53-211ENST00000571805 BLCAPP62952 87 aa17.27■□□□□ 0.36
VPS53-211ENST00000571805 LAGE3Q14657 143 aa17.27■□□□□ 0.36
VPS53-211ENST00000571805 OR10J6PQ8NGY7 276 aa17.27■□□□□ 0.36
VPS53-211ENST00000571805 J3KRW8 73 aa17.26■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms