RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 NCR2O95944 276 aa8.46□□□□□ -1.06
CUX1-212ENST00000547394 RPLP1P05386 114 aaKnown RBP8.46□□□□□ -1.06
CUX1-212ENST00000547394 C3orf79P0CE67 100 aa8.46□□□□□ -1.06
CUX1-212ENST00000547394 PAFAH1B2P68402 229 aa8.46□□□□□ -1.06
CUX1-212ENST00000547394 FAM106AQ4KMX7 169 aa8.46□□□□□ -1.06
CUX1-212ENST00000547394 ATP5L2Q7Z4Y8 100 aa8.46□□□□□ -1.06
CUX1-212ENST00000547394 GPHB5Q86YW7 130 aa8.46□□□□□ -1.06
CUX1-212ENST00000547394 PRR9Q5T870 116 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 ZNF738Q8NE65 137 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 WFDC11Q8NEX6 87 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 ESDP10768 282 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 RAB4AP20338 218 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 TWIST1Q15672 202 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 DEFB113Q30KQ7 82 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 COX19Q49B96 90 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 SPATA12Q7Z6I5 190 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 OR4B1Q8NGF8 309 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 GFRA4Q9GZZ7 299 aa8.45□□□□□ -1.06
CUX1-212ENST00000547394 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP8.44□□□□□ -1.06
CUX1-212ENST00000547394 DSCR9P59020 149 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 EBLN2Q6P2I7 272 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 C18orf65Q6ZTR6 163 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 Q8N976 141 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 NPFFR1Q9GZQ6 430 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 HAX1O00165 279 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 BATFQ16520 125 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 DEFB136Q30KP8 78 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 RASL11AQ6T310 242 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 DUX3Q96PT4 197 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 RHPN1-AS1Q9BWJ2 59 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 TP73-AS1Q9UF72 201 aa8.44□□□□□ -1.06
CUX1-212ENST00000547394 TRBV6-1A0A0K0K1D8 114 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 SAPCD1Q5SSQ6 148 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 PMCHL2Q9BQD1 86 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 U3KQE9 123 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 KMT2BQ9UMN6 2715 aaPredicted RBP8.43□□□□□ -1.06
CUX1-212ENST00000547394 D6R8Y8 96 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 IGLV1-40P01703 118 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 LOXL1Q08397 574 aaPredicted RBP8.43□□□□□ -1.06
CUX1-212ENST00000547394 CRIP2P52943 208 aaPredicted RBP8.43□□□□□ -1.06
CUX1-212ENST00000547394 RIGQ13278 110 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 KLK9Q2XQG4 91 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 TMEM78Q5T7P6 136 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 FER1L6-AS1Q8NA97 138 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 NDFIP1Q9BT67 221 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 KLK9Q9UKQ9 250 aa8.43□□□□□ -1.06
CUX1-212ENST00000547394 A0A087X0K7 114 aa8.42□□□□□ -1.06
CUX1-212ENST00000547394 IGKV3D-20A0A0C4DH25 116 aa8.42□□□□□ -1.06
CUX1-212ENST00000547394 IGHV1-24A0A0C4DH33 117 aa8.42□□□□□ -1.06
CUX1-212ENST00000547394 IGKV3-20P01619 116 aa8.42□□□□□ -1.06
CUX1-212ENST00000547394 GATA1P15976 413 aaPredicted RBP8.42□□□□□ -1.06
CUX1-212ENST00000547394 HIST1H1AQ02539 215 aaPredicted RBP8.42□□□□□ -1.06
CUX1-212ENST00000547394 C11orf44Q8N8P7 122 aa8.42□□□□□ -1.06
CUX1-212ENST00000547394 BORCS7Q96B45 105 aa8.42□□□□□ -1.06
CUX1-212ENST00000547394 M0QZK8 103 aa8.42□□□□□ -1.06
CUX1-212ENST00000547394 CFHR3Q02985 330 aa8.42□□□□□ -1.06
CUX1-212ENST00000547394 SLC50A1Q9BRV3 221 aa8.42□□□□□ -1.06
CUX1-212ENST00000547394 VAMP8Q9BV40 100 aa8.42□□□□□ -1.06
CUX1-212ENST00000547394 NDUFA4O00483 81 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 KLF5Q13887 457 aaPredicted RBP8.41□□□□□ -1.06
CUX1-212ENST00000547394 FAM231BA6NCW3 169 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 FABP5P3A8MUU1 101 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 EVI2AP22794 236 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 GATA3P23771 443 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 IFI27P40305 119 aaPredicted RBP8.41□□□□□ -1.06
CUX1-212ENST00000547394 SYNJ2BPP57105 145 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 TCTAP57738 103 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 TEX43Q6ZNM6 134 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 KRTAP1-3Q8IUG1 177 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 OR10AG1Q8NH19 301 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 TMEM190Q8WZ59 177 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 USMG5Q96IX5 58 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 TMEM208Q9BTX3 173 aa8.41□□□□□ -1.06
CUX1-212ENST00000547394 PEF1Q9UBV8 284 aaKnown RBP8.41□□□□□ -1.06
CUX1-212ENST00000547394 LINC00614P0C842 121 aa8.4□□□□□ -1.06
CUX1-212ENST00000547394 PSMB8P28062 276 aa8.4□□□□□ -1.06
CUX1-212ENST00000547394 ARL6IP6Q8N6S5 226 aa8.4□□□□□ -1.06
CUX1-212ENST00000547394 NPSP0C0P6 89 aa8.4□□□□□ -1.06
CUX1-212ENST00000547394 KHDC1LQ5JSQ8 128 aa8.4□□□□□ -1.06
CUX1-212ENST00000547394 MIEN1Q9BRT3 115 aa8.4□□□□□ -1.06
CUX1-212ENST00000547394 SETXQ7Z333 2677 aaKnown RBP8.4□□□□□ -1.07
CUX1-212ENST00000547394 TRAV26-2A0A0B4J265 109 aa8.4□□□□□ -1.07
CUX1-212ENST00000547394 BMI1P35226 326 aa8.4□□□□□ -1.07
CUX1-212ENST00000547394 MRPL51Q4U2R6 128 aaKnown RBP8.4□□□□□ -1.07
CUX1-212ENST00000547394 PRSS57Q6UWY2 283 aa8.4□□□□□ -1.07
CUX1-212ENST00000547394 C20orf144Q9BQM9 153 aa8.4□□□□□ -1.07
CUX1-212ENST00000547394 DAZ1Q9NQZ3 744 aaKnown RBP8.4□□□□□ -1.07
CUX1-212ENST00000547394 VPREB3Q9UKI3 123 aa8.4□□□□□ -1.07
CUX1-212ENST00000547394 IGHV7-4-1A0A0J9YVY3 117 aa8.39□□□□□ -1.07
CUX1-212ENST00000547394 DLEU1O43261 78 aa8.39□□□□□ -1.07
CUX1-212ENST00000547394 DEFB104AQ8WTQ1 72 aa8.39□□□□□ -1.07
CUX1-212ENST00000547394 A0A0G2JLM5 398 aa8.39□□□□□ -1.07
CUX1-212ENST00000547394 C2orf70A6NJV1 201 aa8.39□□□□□ -1.07
CUX1-212ENST00000547394 H3BVH4 76 aa8.39□□□□□ -1.07
CUX1-212ENST00000547394 ZNF688P0C7X2 276 aa8.39□□□□□ -1.07
CUX1-212ENST00000547394 S100A7P31151 101 aa8.39□□□□□ -1.07
CUX1-212ENST00000547394 RNASE4P34096 147 aaKnown RBP8.39□□□□□ -1.07
CUX1-212ENST00000547394 PRSS3P2Q8NHM4 247 aa8.39□□□□□ -1.07
CUX1-212ENST00000547394 UFC1Q9Y3C8 167 aa8.39□□□□□ -1.07
CUX1-212ENST00000547394 GOLT1BQ9Y3E0 138 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 67.7 ms