RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 TRAV9-2A0A087WT02 112 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 C16orf92Q96LL3 132 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 GFRA4Q9GZZ7 299 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 FLNAP21333 2647 aaKnown RBP12.99□□□□□ -0.33
USP28-208ENST00000540438 C8orf86Q6ZUL3 223 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 HIF1ANQ9NWT6 349 aa12.99□□□□□ -0.33
USP28-208ENST00000540438 IGKV3-20P01619 116 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 OR10AG1Q8NH19 301 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 SMIM12Q96EX1 92 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 C20orf173Q96LM9 149 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 IGHV1-69DA0A0B4J2H0 117 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 IGHV1-69P01742 117 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 ARL3P36405 182 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 RNF24Q9Y225 148 aa12.98□□□□□ -0.33
USP28-208ENST00000540438 TRAV8-2A0A0B4J237 113 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 TM4SF20Q53R12 229 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 PRR9Q5T870 116 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 LYPD1Q8N2G4 141 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 EEF1AKMT3Q96AZ1 226 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 NDFIP1Q9BT67 221 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 A0A087X0K7 114 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 OR5AL1P0C617 328 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 METTL26Q96S19 204 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 ITPR2Q14571 2701 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 MPV17L2Q567V2 206 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 MAP1LC3CQ9BXW4 147 aa12.97□□□□□ -0.33
USP28-208ENST00000540438 PAX8Q06710 450 aa12.96□□□□□ -0.33
USP28-208ENST00000540438 PDE6HQ13956 83 aa12.96□□□□□ -0.33
USP28-208ENST00000540438 IGKV3D-20A0A0C4DH25 116 aa12.96□□□□□ -0.34
USP28-208ENST00000540438 CLEC2AQ6UVW9 174 aa12.96□□□□□ -0.34
USP28-208ENST00000540438 C16orf54Q6UWD8 224 aa12.96□□□□□ -0.34
USP28-208ENST00000540438 ZNF738Q8NE65 137 aa12.96□□□□□ -0.34
USP28-208ENST00000540438 PIMREGQ9BSJ6 248 aa12.96□□□□□ -0.34
USP28-208ENST00000540438 A0A096LNJ9 63 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 OOSP1A8MZH6 123 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 FAM104BQ5XKR9 115 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 TTTY13Q9BZ97 58 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 ITPR3Q14573 2671 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 NACAE9PAV3 2078 aa12.95□□□□□ -0.34
USP28-208ENST00000540438 CACNG7P62955 275 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 H3BVH4 76 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 SAPCD1Q5SSQ6 148 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 MOB4Q9Y3A3 225 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 FABP5P3A8MUU1 101 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 M0R381 172 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 ORMDL3Q8N138 153 aa12.94□□□□□ -0.34
USP28-208ENST00000540438 NAA38Q9BRA0 125 aaKnown RBP12.94□□□□□ -0.34
USP28-208ENST00000540438 NUDT3O95989 172 aa12.93□□□□□ -0.34
USP28-208ENST00000540438 TMEM78Q5T7P6 136 aa12.93□□□□□ -0.34
USP28-208ENST00000540438 KLHDC1Q8N7A1 406 aa12.93□□□□□ -0.34
USP28-208ENST00000540438 TCF21O43680 179 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 IGHV4-59P01825 116 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 C10orf105Q8TEF2 133 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 CHCHD1Q96BP2 118 aaKnown RBP12.92□□□□□ -0.34
USP28-208ENST00000540438 FAM231BA6NCW3 169 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 HIST1H1AQ02539 215 aaPredicted RBP12.92□□□□□ -0.34
USP28-208ENST00000540438 LBHQ53QV2 105 aaPredicted RBP12.92□□□□□ -0.34
USP28-208ENST00000540438 SPOCK3Q9BQ16 436 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 ZNF747Q9BV97 191 aa12.92□□□□□ -0.34
USP28-208ENST00000540438 CBY3A6NI87 242 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 SCGB2A1O75556 95 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 TENM4Q6N022 2769 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 S100A7AQ86SG5 101 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 OR4X2Q8NGF9 303 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 BBC3Q96PG8 261 aaPredicted RBP12.91□□□□□ -0.34
USP28-208ENST00000540438 DKK2Q9UBU2 259 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 K7EMI3 77 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 COL5A1-AS1Q5SY13 56 aa12.91□□□□□ -0.34
USP28-208ENST00000540438 KRTAP10-9P60411 292 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 ANKRD39Q53RE8 183 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 HELZ2Q9BYK8 2649 aaKnown RBP12.9□□□□□ -0.34
USP28-208ENST00000540438 TGFAP01135 160 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 BMI1P35226 326 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 ZNF48Q96MX3 618 aaPredicted RBP12.9□□□□□ -0.34
USP28-208ENST00000540438 AKAP9Q99996 3911 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 TMEM191AQ9H0A3 160 aa12.9□□□□□ -0.34
USP28-208ENST00000540438 HSBP1L1C9JCN9 74 aa12.89□□□□□ -0.35
USP28-208ENST00000540438 RNASE4P34096 147 aaKnown RBP12.89□□□□□ -0.35
USP28-208ENST00000540438 SPANXN1Q5VSR9 72 aa12.89□□□□□ -0.35
USP28-208ENST00000540438 HIST2H2BCQ6DN03 193 aa12.89□□□□□ -0.35
USP28-208ENST00000540438 RNF185Q96GF1 192 aa12.89□□□□□ -0.35
USP28-208ENST00000540438 MSMBP08118 114 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 C20orf202A1L168 122 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 GNRH2O43555 120 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 NEGR1Q7Z3B1 354 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 GPHB5Q86YW7 130 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 GOLT1BQ9Y3E0 138 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 HECTD1Q9ULT8 2610 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 DLEU1O43261 78 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 LEPP41159 167 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 NMUP48645 174 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 HSPB8Q9UJY1 196 aa12.88□□□□□ -0.35
USP28-208ENST00000540438 IGLC6P0CF74 106 aa12.87□□□□□ -0.35
USP28-208ENST00000540438 DEFB112Q30KQ8 113 aa12.87□□□□□ -0.35
USP28-208ENST00000540438 UBR5O95071 2799 aaPredicted RBP12.87□□□□□ -0.35
USP28-208ENST00000540438 TRBV7-1A0A0A6YYK4 115 aa12.87□□□□□ -0.35
USP28-208ENST00000540438 DUX3Q96PT4 197 aa12.87□□□□□ -0.35
USP28-208ENST00000540438 FBLL1A6NHQ2 334 aaKnown RBP12.86□□□□□ -0.35
USP28-208ENST00000540438 RNF223E7ERA6 249 aa12.86□□□□□ -0.35
USP28-208ENST00000540438 SFTPCP11686 197 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 103.4 ms