RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 MS4A6AQ9H2W1 248 aa10.12□□□□□ -0.79
LDLR-203ENST00000535915 PEF1Q9UBV8 284 aaKnown RBP10.12□□□□□ -0.79
LDLR-203ENST00000535915 GAGE10A6NGK3 116 aa10.12□□□□□ -0.79
LDLR-203ENST00000535915 C8orf86Q6ZUL3 223 aa10.12□□□□□ -0.79
LDLR-203ENST00000535915 TRAV8-6A0A0B4J262 113 aa10.11□□□□□ -0.79
LDLR-203ENST00000535915 TRAV40A0A0B4J280 105 aa10.11□□□□□ -0.79
LDLR-203ENST00000535915 PPIFP30405 207 aaKnown RBP10.11□□□□□ -0.79
LDLR-203ENST00000535915 PAX8Q06710 450 aa10.11□□□□□ -0.79
LDLR-203ENST00000535915 LINC01559Q495D7 138 aa10.11□□□□□ -0.79
LDLR-203ENST00000535915 TMEM78Q5T7P6 136 aa10.11□□□□□ -0.79
LDLR-203ENST00000535915 AGPAT4-IT1Q9H0P7 198 aa10.11□□□□□ -0.79
LDLR-203ENST00000535915 TRAV8-2A0A0B4J237 113 aa10.11□□□□□ -0.79
LDLR-203ENST00000535915 IGHV1-69DA0A0B4J2H0 117 aa10.11□□□□□ -0.79
LDLR-203ENST00000535915 IGHV1-69P01742 117 aa10.11□□□□□ -0.79
LDLR-203ENST00000535915 CD5LO43866 347 aa10.1□□□□□ -0.79
LDLR-203ENST00000535915 HBDP02042 147 aa10.1□□□□□ -0.79
LDLR-203ENST00000535915 TRGV3P03979 118 aa10.1□□□□□ -0.79
LDLR-203ENST00000535915 PRSS57Q6UWY2 283 aa10.1□□□□□ -0.79
LDLR-203ENST00000535915 CNFNQ9BYD5 112 aa10.1□□□□□ -0.79
LDLR-203ENST00000535915 PIMREGQ9BSJ6 248 aa10.1□□□□□ -0.79
LDLR-203ENST00000535915 FAM223BA6NKX1 122 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 FAM223AQ8IWN6 122 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 PIFOQ8TCI5 191 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 RNF185Q96GF1 192 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 PSMG3-AS1Q96PY0 264 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 SELENOKQ9Y6D0 94 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 CELSR2Q9HCU4 2923 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 IGHV4-61A0A0C4DH41 118 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 HIST1H1AQ02539 215 aaPredicted RBP10.09□□□□□ -0.79
LDLR-203ENST00000535915 U3KQE9 123 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 IGKV3D-20A0A0C4DH25 116 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 G3V4G9 280 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 ARL3P36405 182 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 C16orf92Q96LL3 132 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 AP1S3Q96PC3 154 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 MAP1LC3AQ9H492 121 aa10.09□□□□□ -0.79
LDLR-203ENST00000535915 C7orf71A4D174 169 aa10.08□□□□□ -0.8
LDLR-203ENST00000535915 C19orf54Q5BKX5 351 aa10.08□□□□□ -0.8
LDLR-203ENST00000535915 MRPL53Q96EL3 112 aaKnown RBP10.08□□□□□ -0.8
LDLR-203ENST00000535915 C11orf21Q9P2W6 132 aa10.08□□□□□ -0.8
LDLR-203ENST00000535915 PKD1L2Q7Z442 2459 aa10.08□□□□□ -0.8
LDLR-203ENST00000535915 CACNG7P62955 275 aa10.08□□□□□ -0.8
LDLR-203ENST00000535915 LY6EQ16553 131 aa10.08□□□□□ -0.8
LDLR-203ENST00000535915 GTF2H5Q6ZYL4 71 aa10.08□□□□□ -0.8
LDLR-203ENST00000535915 CCL19Q99731 98 aa10.08□□□□□ -0.8
LDLR-203ENST00000535915 TMEM238LA0A1B0GVL6 79 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 GAS8-AS1O95177 125 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 COX8AP10176 69 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 LGALS9BQ3B8N2 356 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 LGALS9CQ6DKI2 356 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 HIF1ANQ9NWT6 349 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 NDUFS8O00217 210 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 IGHV4-38-2P0DP08 117 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 EVI2AP22794 236 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 Q5PR19 223 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 SAMD13Q5VXD3 122 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 C9orf47Q6ZRZ4 202 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 IFI27L1Q96BM0 104 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 CLUHP3Q96NS8 147 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 ATP6V0BQ99437 205 aa10.07□□□□□ -0.8
LDLR-203ENST00000535915 SNAI2O43623 268 aa10.06□□□□□ -0.8
LDLR-203ENST00000535915 TNFRSF6BO95407 300 aa10.06□□□□□ -0.8
LDLR-203ENST00000535915 TRBV12-3P01733 135 aa10.06□□□□□ -0.8
LDLR-203ENST00000535915 CRIP2P52943 208 aaPredicted RBP10.06□□□□□ -0.8
LDLR-203ENST00000535915 OR1N2Q8NGR9 330 aa10.06□□□□□ -0.8
LDLR-203ENST00000535915 CRYBG3Q68DQ2 2970 aa10.06□□□□□ -0.8
LDLR-203ENST00000535915 CFAP46Q8IYW2 2715 aa10.06□□□□□ -0.8
LDLR-203ENST00000535915 FOXE3Q13461 319 aa10.06□□□□□ -0.8
LDLR-203ENST00000535915 WFDC3Q8IUB2 231 aa10.06□□□□□ -0.8
LDLR-203ENST00000535915 C10orf105Q8TEF2 133 aa10.06□□□□□ -0.8
LDLR-203ENST00000535915 GLMPQ8WWB7 406 aa10.06□□□□□ -0.8
LDLR-203ENST00000535915 SPG11Q96JI7 2443 aa10.05□□□□□ -0.8
LDLR-203ENST00000535915 UNQ9165/PRO28630Q6UXU0 137 aa10.05□□□□□ -0.8
LDLR-203ENST00000535915 H3BUX3 64 aa10.05□□□□□ -0.8
LDLR-203ENST00000535915 GATA1P15976 413 aaPredicted RBP10.05□□□□□ -0.8
LDLR-203ENST00000535915 Q6ZQT7 251 aa10.05□□□□□ -0.8
LDLR-203ENST00000535915 C9orf139Q6ZV77 190 aa10.05□□□□□ -0.8
LDLR-203ENST00000535915 C18orf15Q96N68 181 aa10.05□□□□□ -0.8
LDLR-203ENST00000535915 FLNCQ14315 2725 aa10.05□□□□□ -0.8
LDLR-203ENST00000535915 SMAD7O15105 426 aaKnown RBP10.04□□□□□ -0.8
LDLR-203ENST00000535915 IGF1P05019 195 aa10.04□□□□□ -0.8
LDLR-203ENST00000535915 NXT2Q9NPJ8 142 aaKnown RBP10.04□□□□□ -0.8
LDLR-203ENST00000535915 IGHV7-4-1A0A0J9YVY3 117 aa10.04□□□□□ -0.8
LDLR-203ENST00000535915 IGHV3-11P01762 117 aa10.04□□□□□ -0.8
LDLR-203ENST00000535915 LEPP41159 167 aa10.04□□□□□ -0.8
LDLR-203ENST00000535915 TCTAP57738 103 aa10.04□□□□□ -0.8
LDLR-203ENST00000535915 C20orf173Q96LM9 149 aa10.04□□□□□ -0.8
LDLR-203ENST00000535915 J3KRW8 73 aa10.03□□□□□ -0.8
LDLR-203ENST00000535915 NDUFA4O00483 81 aa10.03□□□□□ -0.8
LDLR-203ENST00000535915 ATP5J2P56134 94 aa10.03□□□□□ -0.8
LDLR-203ENST00000535915 DPF1Q92782 380 aa10.03□□□□□ -0.8
LDLR-203ENST00000535915 UFC1Q9Y3C8 167 aa10.03□□□□□ -0.8
LDLR-203ENST00000535915 C2orf91Q6ZV80 131 aa10.03□□□□□ -0.8
LDLR-203ENST00000535915 UTP20O75691 2785 aaKnown RBP10.03□□□□□ -0.8
LDLR-203ENST00000535915 IGHV4-30-2A0A087WSY4 118 aa10.03□□□□□ -0.8
LDLR-203ENST00000535915 IGHG2P01859 326 aa10.03□□□□□ -0.8
LDLR-203ENST00000535915 PF4V1P10720 104 aa10.03□□□□□ -0.8
LDLR-203ENST00000535915 SPANXN1Q5VSR9 72 aa10.03□□□□□ -0.8
LDLR-203ENST00000535915 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.02□□□□□ -0.83e-7■■■□□ 14.8
LDLR-203ENST00000535915 LINC01546A6NGU7 62 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms