RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 SERPINA6P08185 405 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 SPI1P17947 270 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 NFYAP23511 347 aaPredicted RBP1.03□□□□□ -2.24
VPS41-207ENST00000439468 SRP14P37108 136 aaKnown RBP1.03□□□□□ -2.24
VPS41-207ENST00000439468 CDKN2CP42773 168 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 DEFA3P59666 94 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 DEFB121Q5J5C9 76 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 SPANXN3Q5MJ09 141 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 AAED1Q7RTV5 226 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 PFN4Q8NHR9 129 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 C10orf105Q8TEF2 133 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 ZNF418Q8TF45 676 aaPredicted RBP1.03□□□□□ -2.24
VPS41-207ENST00000439468 C11orf40Q8WZ69 217 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 PSMF1Q92530 271 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 DCUN1D1Q96GG9 259 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 SCGB3A1Q96QR1 104 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 OR52E6Q96RD3 313 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 RETNLBQ9BQ08 111 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 CTNNBIP1Q9NSA3 81 aaPredicted RBP1.03□□□□□ -2.24
VPS41-207ENST00000439468 C14orf105Q9NVL8 296 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 HS3ST2Q9Y278 367 aa1.03□□□□□ -2.24
VPS41-207ENST00000439468 A0A087WUJ7 227 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 IGKV3D-7A0A0C4DH55 119 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 IGKV3OR2-268A0A0C4DH90 116 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 PQLC2LA1A4F0 135 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 GOLGA6L19H0YKK7 550 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 RPP14O95059 124 aaKnown RBP1.02□□□□□ -2.25
VPS41-207ENST00000439468 LPAP08519 4548 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 OMPP47874 163 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 CDC42P60953 191 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 ARFGEF3Q5TH69 2177 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 Q6ZQT0 140 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 ZNF565Q8N9K5 539 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 OR13C4Q8NGS5 318 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 TOMM6Q96B49 74 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 GINS4Q9BRT9 223 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 COMMD5Q9GZQ3 224 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 PRELID3BQ9Y3B1 194 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 TMEM56-RWDD3S4R434 201 aa1.02□□□□□ -2.25
VPS41-207ENST00000439468 MACF1Q9UPN3 7388 aaKnown RBP1.01□□□□□ -2.25
VPS41-207ENST00000439468 NINQ8N4C6 2090 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 TRAV9-1A0A075B6T8 112 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 FAM92AA1XBS5 289 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 PIRO00625 290 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 LY6G6CO95867 125 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 TTRP02766 147 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 CTSDP07339 412 aaPredicted RBP1.01□□□□□ -2.25
VPS41-207ENST00000439468 METTL15P1P0C7V9 234 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 CEBPGP53567 150 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 C10orf55Q5SWW7 151 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 UNQ6190/PRO20217Q6UXQ8 127 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 MIR17HGQ75NE6 70 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 YIPF3Q9GZM5 350 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 RNASE7Q9H1E1 156 aaKnown RBP1.01□□□□□ -2.25
VPS41-207ENST00000439468 OR51V1Q9H2C8 321 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 BOLA2Q9H3K6 86 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 PSTPIP2Q9H939 334 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 CKLFQ9UBR5 152 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 ERGIC3Q9Y282 383 aa1.01□□□□□ -2.25
VPS41-207ENST00000439468 TRAV1-1A0A0B4J248 108 aa1□□□□□ -2.25
VPS41-207ENST00000439468 TMEM114B3SHH9 223 aa1□□□□□ -2.25
VPS41-207ENST00000439468 MRPS14O60783 128 aaKnown RBP1□□□□□ -2.25
VPS41-207ENST00000439468 OR2J2O76002 312 aa1□□□□□ -2.25
VPS41-207ENST00000439468 ANGP03950 147 aaKnown RBP1□□□□□ -2.25
VPS41-207ENST00000439468 ARL14EPLP0DKL9 152 aa1□□□□□ -2.25
VPS41-207ENST00000439468 CXCL8P10145 99 aa1□□□□□ -2.25
VPS41-207ENST00000439468 RNASE3P12724 160 aaKnown RBP1□□□□□ -2.25
VPS41-207ENST00000439468 CRYGSP22914 178 aa1□□□□□ -2.25
VPS41-207ENST00000439468 G6PCP35575 357 aa1□□□□□ -2.25
VPS41-207ENST00000439468 STX5Q13190 355 aa1□□□□□ -2.25
VPS41-207ENST00000439468 KHDC3LQ587J8 217 aa1□□□□□ -2.25
VPS41-207ENST00000439468 RPS19BP1Q86WX3 136 aaKnown RBP1□□□□□ -2.25
VPS41-207ENST00000439468 SIGLECL1Q8N7X8 197 aa1□□□□□ -2.25
VPS41-207ENST00000439468 MNS1Q8NEH6 495 aa1□□□□□ -2.25
VPS41-207ENST00000439468 OR5A1Q8NGJ0 315 aa1□□□□□ -2.25
VPS41-207ENST00000439468 SLC50A1Q9BRV3 221 aa1□□□□□ -2.25
VPS41-207ENST00000439468 CCDC94Q9BW85 323 aaPredicted RBP1□□□□□ -2.25
VPS41-207ENST00000439468 DCSTAMPQ9H295 470 aa1□□□□□ -2.25
VPS41-207ENST00000439468 SLC39A9Q9NUM3 307 aa1□□□□□ -2.25
VPS41-207ENST00000439468 CYSLTR1Q9Y271 337 aa1□□□□□ -2.25
VPS41-207ENST00000439468 GPR98Q8WXG9 6306 aa1□□□□□ -2.25
VPS41-207ENST00000439468 IGKV2-40A0A087WW87 121 aaPredicted RBP0.99□□□□□ -2.25
VPS41-207ENST00000439468 FADS1O60427 444 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 TNFP01375 233 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 IGKV2D-40P01614 121 aaPredicted RBP0.99□□□□□ -2.25
VPS41-207ENST00000439468 HTR1AP08908 422 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 ASAH2BP0C7U1 165 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 CDK10Q15131 360 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 ZNF826PQ6ZT77 177 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 LXNQ9BS40 222 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 CYSTM1Q9H1C7 97 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 UCK1Q9HA47 277 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 STOML2Q9UJZ1 356 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 TNCP24821 2201 aa0.99□□□□□ -2.25
VPS41-207ENST00000439468 IGKV3-7A0A075B6H7 116 aa0.98□□□□□ -2.25
VPS41-207ENST00000439468 TRAV14DV4A0A0A6YYC5 116 aa0.98□□□□□ -2.25
VPS41-207ENST00000439468 TRAV3A0A0B4J244 114 aa0.98□□□□□ -2.25
VPS41-207ENST00000439468 hADV38S2A0JD32 116 aa0.98□□□□□ -2.25
VPS41-207ENST00000439468 CLPSL1A2RUU4 121 aa0.98□□□□□ -2.25
VPS41-207ENST00000439468 F8W036 122 aa0.98□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms