RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 TDRG1Q3Y452 100 aa13.79□□□□□ -0.2
SYNPO-201ENST00000307662 TEX48A0A1B0GUV7 120 aa13.78□□□□□ -0.2
SYNPO-201ENST00000307662 SYNJ2BPP57105 145 aa13.78□□□□□ -0.2
SYNPO-201ENST00000307662 TEX36Q5VZQ5 186 aa13.78□□□□□ -0.2
SYNPO-201ENST00000307662 SPANXCQ9NY87 97 aa13.78□□□□□ -0.2
SYNPO-201ENST00000307662 B5MCH6 92 aa13.78□□□□□ -0.2
SYNPO-201ENST00000307662 CFC1BP0CG36 223 aa13.77□□□□□ -0.2
SYNPO-201ENST00000307662 CFC1P0CG37 223 aa13.77□□□□□ -0.2
SYNPO-201ENST00000307662 RNASE8Q8TDE3 154 aaKnown RBP13.77□□□□□ -0.2
SYNPO-201ENST00000307662 PFN2P35080 140 aa13.77□□□□□ -0.2
SYNPO-201ENST00000307662 TMEM126AQ9H061 195 aa13.77□□□□□ -0.2
SYNPO-201ENST00000307662 SCRT2Q9NQ03 307 aa13.77□□□□□ -0.2
SYNPO-201ENST00000307662 SS18L2Q9UHA2 77 aa13.77□□□□□ -0.2
SYNPO-201ENST00000307662 LY6HO94772 140 aa13.77□□□□□ -0.21
SYNPO-201ENST00000307662 PLXNA4Q9HCM2 1894 aa13.77□□□□□ -0.21
SYNPO-201ENST00000307662 UBE2E1P51965 193 aa13.77□□□□□ -0.21
SYNPO-201ENST00000307662 IGLL5B9A064 214 aa13.76□□□□□ -0.21
SYNPO-201ENST00000307662 Q8NFD4 153 aa13.76□□□□□ -0.21
SYNPO-201ENST00000307662 TRAV13-2A0A0B4J235 113 aa13.76□□□□□ -0.21
SYNPO-201ENST00000307662 LOXP28300 417 aaPredicted RBP13.76□□□□□ -0.21
SYNPO-201ENST00000307662 TRBV25-1A0A075B6N4 114 aa13.76□□□□□ -0.21
SYNPO-201ENST00000307662 LY6G6EA0A0G2JKS1 128 aa13.76□□□□□ -0.21
SYNPO-201ENST00000307662 CDK2AP2O75956 126 aa13.76□□□□□ -0.21
SYNPO-201ENST00000307662 U3KQA8 63 aa13.76□□□□□ -0.21
SYNPO-201ENST00000307662 PRSS29PA6NIE9 313 aa13.76□□□□□ -0.21
SYNPO-201ENST00000307662 HAMPP81172 84 aa13.76□□□□□ -0.21
SYNPO-201ENST00000307662 MGAMO43451 1857 aa13.75□□□□□ -0.21
SYNPO-201ENST00000307662 IGHV3-16A0A0C4DH30 117 aa13.75□□□□□ -0.21
SYNPO-201ENST00000307662 LINC01545Q5VT33 79 aa13.75□□□□□ -0.21
SYNPO-201ENST00000307662 SH2D6Q7Z4S9 175 aa13.75□□□□□ -0.21
SYNPO-201ENST00000307662 ACACAQ13085 2346 aa13.75□□□□□ -0.21
SYNPO-201ENST00000307662 INTS1Q8N201 2190 aaKnown RBP13.75□□□□□ -0.21
SYNPO-201ENST00000307662 K7EMI3 77 aa13.75□□□□□ -0.21
SYNPO-201ENST00000307662 RBMY1FQ15415 496 aaKnown RBP13.75□□□□□ -0.21
SYNPO-201ENST00000307662 KLHL30-AS1Q8NEE0 82 aa13.75□□□□□ -0.21
SYNPO-201ENST00000307662 G3V318 75 aa13.74□□□□□ -0.21
SYNPO-201ENST00000307662 CITED2Q99967 270 aaPredicted RBP13.74□□□□□ -0.21
SYNPO-201ENST00000307662 NDUFA4O00483 81 aa13.74□□□□□ -0.21
SYNPO-201ENST00000307662 SRSF2Q01130 221 aaKnown RBP13.74□□□□□ -0.21
SYNPO-201ENST00000307662 LY6DQ14210 128 aa13.74□□□□□ -0.21
SYNPO-201ENST00000307662 ZNF493Q6ZR52 646 aa13.74□□□□□ -0.21
SYNPO-201ENST00000307662 RIF1Q5UIP0 2472 aaKnown RBP13.74□□□□□ -0.21
SYNPO-201ENST00000307662 CRYBA4P53673 196 aa13.74□□□□□ -0.21
SYNPO-201ENST00000307662 ZNF491Q8N8L2 437 aa13.74□□□□□ -0.21
SYNPO-201ENST00000307662 FER1L5A0AVI2 2057 aa13.73□□□□□ -0.21
SYNPO-201ENST00000307662 EGR2P11161 476 aaPredicted RBP13.73□□□□□ -0.21
SYNPO-201ENST00000307662 BPESC1Q9GZL8 116 aa13.73□□□□□ -0.21
SYNPO-201ENST00000307662 GPR179Q6PRD1 2367 aa13.73□□□□□ -0.21
SYNPO-201ENST00000307662 SPTBN1Q01082 2364 aaKnown RBP13.73□□□□□ -0.21
SYNPO-201ENST00000307662 FOXI2Q6ZQN5 318 aa13.73□□□□□ -0.21
SYNPO-201ENST00000307662 C17orf77Q96MU5 243 aa13.73□□□□□ -0.21
SYNPO-201ENST00000307662 DEFB130BP0DP73 79 aa13.72□□□□□ -0.21
SYNPO-201ENST00000307662 DEFB130AP0DP74 79 aa13.72□□□□□ -0.21
SYNPO-201ENST00000307662 HERVK_113P63121 156 aa13.72□□□□□ -0.21
SYNPO-201ENST00000307662 LINC00173Q6ZV60 143 aa13.72□□□□□ -0.21
SYNPO-201ENST00000307662 RNF166Q96A37 237 aaPredicted RBP13.72□□□□□ -0.21
SYNPO-201ENST00000307662 IGHV3-38A0A0C4DH36 116 aa13.72□□□□□ -0.21
SYNPO-201ENST00000307662 DIAPH2-AS1Q14236 149 aa13.72□□□□□ -0.21
SYNPO-201ENST00000307662 ANKRD39Q53RE8 183 aa13.72□□□□□ -0.21
SYNPO-201ENST00000307662 ROS1P08922 2347 aa13.72□□□□□ -0.21
SYNPO-201ENST00000307662 CRLF1O75462 422 aa13.72□□□□□ -0.21
SYNPO-201ENST00000307662 ZNRF2Q8NHG8 242 aa13.72□□□□□ -0.21
SYNPO-201ENST00000307662 PI4KAP42356 2102 aa13.71□□□□□ -0.21
SYNPO-201ENST00000307662 TMEM243Q9BU79 118 aa13.71□□□□□ -0.21
SYNPO-201ENST00000307662 XCL2Q9UBD3 114 aa13.71□□□□□ -0.21
SYNPO-201ENST00000307662 TRAV12-2A0A075B6T6 113 aa13.71□□□□□ -0.21
SYNPO-201ENST00000307662 SHISA9B4DS77 424 aa13.71□□□□□ -0.21
SYNPO-201ENST00000307662 RUSC1-AS1Q66K80 236 aa13.71□□□□□ -0.22
SYNPO-201ENST00000307662 ACYP1P07311 99 aa13.7□□□□□ -0.22
SYNPO-201ENST00000307662 MRAPQ8TCY5 172 aa13.7□□□□□ -0.22
SYNPO-201ENST00000307662 PLXNA2O75051 1894 aa13.7□□□□□ -0.22
SYNPO-201ENST00000307662 TAX1BP3O14907 124 aa13.7□□□□□ -0.22
SYNPO-201ENST00000307662 IGLV1-44P01699 117 aa13.7□□□□□ -0.22
SYNPO-201ENST00000307662 IGF2BP2-AS1Q96M15 143 aa13.7□□□□□ -0.22
SYNPO-201ENST00000307662 RPL32P62910 135 aaKnown RBP13.69□□□□□ -0.22
SYNPO-201ENST00000307662 CFHR4Q92496 578 aa13.69□□□□□ -0.22
SYNPO-201ENST00000307662 DYNAPQ8N1N2 210 aa13.69□□□□□ -0.22
SYNPO-201ENST00000307662 IGLV3-9A0A075B6K5 115 aa13.69□□□□□ -0.22
SYNPO-201ENST00000307662 RHOHQ15669 191 aa13.69□□□□□ -0.22
SYNPO-201ENST00000307662 DSCR8Q96T75 97 aa13.69□□□□□ -0.22
SYNPO-201ENST00000307662 TINCRA0A1B0GVN0 87 aa13.68□□□□□ -0.22
SYNPO-201ENST00000307662 SSC4DQ8WTU2 575 aa13.68□□□□□ -0.22
SYNPO-201ENST00000307662 HEATR5AQ86XA9 2040 aa13.68□□□□□ -0.22
SYNPO-201ENST00000307662 HEATR1Q9H583 2144 aaKnown RBP13.68□□□□□ -0.22
SYNPO-201ENST00000307662 RBAKDNA6NC62 111 aa13.68□□□□□ -0.22
SYNPO-201ENST00000307662 NXPH4O95158 308 aa13.68□□□□□ -0.22
SYNPO-201ENST00000307662 TRAV12-1A0A0B4J245 112 aa13.67□□□□□ -0.22
SYNPO-201ENST00000307662 DOCK9Q9BZ29 2069 aa13.67□□□□□ -0.22
SYNPO-201ENST00000307662 BAALC-AS2P0C853 105 aa13.67□□□□□ -0.22
SYNPO-201ENST00000307662 YLPM1P49750 1951 aaKnown RBP13.67□□□□□ -0.22
SYNPO-201ENST00000307662 MYO7BQ6PIF6 2116 aa13.67□□□□□ -0.22
SYNPO-201ENST00000307662 GATA1P15976 413 aaPredicted RBP13.67□□□□□ -0.22
SYNPO-201ENST00000307662 CFHR3Q02985 330 aa13.67□□□□□ -0.22
SYNPO-201ENST00000307662 AGPAT4-IT1Q9H0P7 198 aa13.66□□□□□ -0.22
SYNPO-201ENST00000307662 IGHV1-69DA0A0B4J2H0 117 aa13.66□□□□□ -0.22
SYNPO-201ENST00000307662 RNASE13Q5GAN3 156 aaKnown RBP13.66□□□□□ -0.22
SYNPO-201ENST00000307662 C8orf31Q8N9H6 132 aa13.66□□□□□ -0.22
SYNPO-201ENST00000307662 MRPL53Q96EL3 112 aaKnown RBP13.66□□□□□ -0.22
SYNPO-201ENST00000307662 ANAPC1Q9H1A4 1944 aa13.66□□□□□ -0.22
SYNPO-201ENST00000307662 IGHV1-69P01742 117 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms