RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 IGKV3D-20A0A0C4DH25 116 aa16.41■□□□□ 0.22
TRIM28-201ENST00000253024 F6UB75 175 aa16.41■□□□□ 0.22
TRIM28-201ENST00000253024 KIR3DS1Q14943 382 aa16.41■□□□□ 0.22
TRIM28-201ENST00000253024 CLPSL1A2RUU4 121 aa16.41■□□□□ 0.22
TRIM28-201ENST00000253024 GOSR1O95249 250 aa16.41■□□□□ 0.22
TRIM28-201ENST00000253024 ZFAND3Q9H8U3 227 aa16.41■□□□□ 0.22
TRIM28-201ENST00000253024 BMI1P35226 326 aa16.4■□□□□ 0.22
TRIM28-201ENST00000253024 AJUBAQ96IF1 538 aa16.4■□□□□ 0.22
TRIM28-201ENST00000253024 ABCA12Q86UK0 2595 aa16.4■□□□□ 0.22
TRIM28-201ENST00000253024 TRAV40A0A0B4J280 105 aa16.4■□□□□ 0.22
TRIM28-201ENST00000253024 Q6AWC8 147 aa16.4■□□□□ 0.22
TRIM28-201ENST00000253024 S100A7AQ86SG5 101 aa16.4■□□□□ 0.22
TRIM28-201ENST00000253024 RNF185Q96GF1 192 aa16.4■□□□□ 0.22
TRIM28-201ENST00000253024 IGHV2-70DA0A0C4DH43 119 aa16.39■□□□□ 0.21
TRIM28-201ENST00000253024 H3BVH4 76 aa16.39■□□□□ 0.21
TRIM28-201ENST00000253024 COX8AP10176 69 aa16.39■□□□□ 0.21
TRIM28-201ENST00000253024 UNQ9165/PRO28630Q6UXU0 137 aa16.39■□□□□ 0.21
TRIM28-201ENST00000253024 ZNF493Q6ZR52 646 aa16.39■□□□□ 0.21
TRIM28-201ENST00000253024 C16orf92Q96LL3 132 aa16.39■□□□□ 0.21
TRIM28-201ENST00000253024 COL25A1Q9BXS0 654 aaPredicted RBP16.39■□□□□ 0.21
TRIM28-201ENST00000253024 LRRK2Q5S007 2527 aa16.39■□□□□ 0.21
TRIM28-201ENST00000253024 TRBV6-1A0A0K0K1D8 114 aa16.38■□□□□ 0.21
TRIM28-201ENST00000253024 TNFRSF6BO95407 300 aa16.38■□□□□ 0.21
TRIM28-201ENST00000253024 C8orf86Q6ZUL3 223 aa16.38■□□□□ 0.21
TRIM28-201ENST00000253024 DTX2Q86UW9 622 aa16.38■□□□□ 0.21
TRIM28-201ENST00000253024 HIF1ANQ9NWT6 349 aa16.38■□□□□ 0.21
TRIM28-201ENST00000253024 FBLL1A6NHQ2 334 aaKnown RBP16.38■□□□□ 0.21
TRIM28-201ENST00000253024 M0R381 172 aa16.38■□□□□ 0.21
TRIM28-201ENST00000253024 C12orf54Q6X4T0 127 aa16.38■□□□□ 0.21
TRIM28-201ENST00000253024 MYO9AB2RTY4 2548 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 GNLYP22749 145 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 HIST1H1AQ02539 215 aaPredicted RBP16.37■□□□□ 0.21
TRIM28-201ENST00000253024 TMEM78Q5T7P6 136 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 PRR9Q5T870 116 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 Q6ZS46 218 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 GTSCR1Q86UQ5 136 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 TMEM158Q8WZ71 300 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 IGKV2D-26A0A0A0MRZ7 120 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 CENPVL3A0A0U1RRI6 287 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 NPFFO15130 113 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 IGLC6P0CF74 106 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 EDN2P20800 178 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 FOXC2Q99958 501 aa16.37■□□□□ 0.21
TRIM28-201ENST00000253024 FAM110DQ8TAY7 271 aaPredicted RBP16.36■□□□□ 0.21
TRIM28-201ENST00000253024 MAP1LC3AQ9H492 121 aa16.36■□□□□ 0.21
TRIM28-201ENST00000253024 TRAV8-2A0A0B4J237 113 aa16.36■□□□□ 0.21
TRIM28-201ENST00000253024 EFNA4P52798 201 aa16.36■□□□□ 0.21
TRIM28-201ENST00000253024 LMO4P61968 165 aa16.36■□□□□ 0.21
TRIM28-201ENST00000253024 TMEM97Q5BJF2 176 aa16.36■□□□□ 0.21
TRIM28-201ENST00000253024 MINOS1Q5TGZ0 78 aa16.36■□□□□ 0.21
TRIM28-201ENST00000253024 SPANXN1Q5VSR9 72 aa16.36■□□□□ 0.21
TRIM28-201ENST00000253024 DEFB125Q8N687 156 aa16.36■□□□□ 0.21
TRIM28-201ENST00000253024 METTL26Q96S19 204 aa16.36■□□□□ 0.21
TRIM28-201ENST00000253024 MINOS1-NBL1R4GNA1 71 aa16.36■□□□□ 0.21
TRIM28-201ENST00000253024 SMAD7O15105 426 aaKnown RBP16.35■□□□□ 0.21
TRIM28-201ENST00000253024 SCGB2A1O75556 95 aa16.35■□□□□ 0.21
TRIM28-201ENST00000253024 UBE2E1P51965 193 aa16.35■□□□□ 0.21
TRIM28-201ENST00000253024 TMEM160Q9NX00 188 aa16.35■□□□□ 0.21
TRIM28-201ENST00000253024 H3BUT2 72 aa16.35■□□□□ 0.21
TRIM28-201ENST00000253024 A0A1B0GW15 77 aa16.35■□□□□ 0.21
TRIM28-201ENST00000253024 NRGNQ92686 78 aa16.35■□□□□ 0.21
TRIM28-201ENST00000253024 C20orf173Q96LM9 149 aa16.34■□□□□ 0.21
TRIM28-201ENST00000253024 SONP18583 2426 aaKnown RBP16.34■□□□□ 0.21
TRIM28-201ENST00000253024 MS4A6AQ9H2W1 248 aa16.33■□□□□ 0.21
TRIM28-201ENST00000253024 PTPN13Q12923 2485 aa16.33■□□□□ 0.2
TRIM28-201ENST00000253024 IGHV4-38-2P0DP08 117 aa16.33■□□□□ 0.2
TRIM28-201ENST00000253024 FGF6P10767 208 aa16.33■□□□□ 0.2
TRIM28-201ENST00000253024 ATP5G2Q06055 141 aa16.33■□□□□ 0.2
TRIM28-201ENST00000253024 TMEM95Q3KNT9 176 aa16.33■□□□□ 0.2
TRIM28-201ENST00000253024 EEF1AKMT3Q96AZ1 226 aa16.33■□□□□ 0.2
TRIM28-201ENST00000253024 S100A7P31151 101 aa16.32■□□□□ 0.2
TRIM28-201ENST00000253024 BLCAPP62952 87 aa16.32■□□□□ 0.2
TRIM28-201ENST00000253024 EBI3Q14213 229 aa16.32■□□□□ 0.2
TRIM28-201ENST00000253024 U3KQK5 164 aa16.32■□□□□ 0.2
TRIM28-201ENST00000253024 GCSHP23434 173 aa16.32■□□□□ 0.2
TRIM28-201ENST00000253024 K7ERJ3 54 aa16.31■□□□□ 0.2
TRIM28-201ENST00000253024 NEGR1Q7Z3B1 354 aa16.31■□□□□ 0.2
TRIM28-201ENST00000253024 PF4V1P10720 104 aa16.31■□□□□ 0.2
TRIM28-201ENST00000253024 C5orf56Q8N8D9 126 aa16.31■□□□□ 0.2
TRIM28-201ENST00000253024 IGSF10Q6WRI0 2623 aa16.3■□□□□ 0.2
TRIM28-201ENST00000253024 AGRNO00468 2067 aa16.3■□□□□ 0.2
TRIM28-201ENST00000253024 TRAV41A0A0B4J266 112 aa16.3■□□□□ 0.2
TRIM28-201ENST00000253024 A1L4Q6 167 aa16.3■□□□□ 0.2
TRIM28-201ENST00000253024 IGHV4-39P01824 125 aa16.3■□□□□ 0.2
TRIM28-201ENST00000253024 ZNF48Q96MX3 618 aaPredicted RBP16.3■□□□□ 0.2
TRIM28-201ENST00000253024 IGHV4-61A0A0C4DH41 118 aa16.3■□□□□ 0.2
TRIM28-201ENST00000253024 IGKV3-20P01619 116 aa16.3■□□□□ 0.2
TRIM28-201ENST00000253024 ARL3P36405 182 aa16.3■□□□□ 0.2
TRIM28-201ENST00000253024 PAX8Q06710 450 aa16.3■□□□□ 0.2
TRIM28-201ENST00000253024 JMJD8Q96S16 334 aa16.3■□□□□ 0.2
TRIM28-201ENST00000253024 MAPK1IP1LQ8NDC0 245 aa16.29■□□□□ 0.2
TRIM28-201ENST00000253024 AP1S3Q96PC3 154 aa16.29■□□□□ 0.2
TRIM28-201ENST00000253024 MGPP08493 103 aa16.29■□□□□ 0.2
TRIM28-201ENST00000253024 S100A4P26447 101 aaKnown RBP16.29■□□□□ 0.2
TRIM28-201ENST00000253024 RBX1P62877 108 aa16.29■□□□□ 0.2
TRIM28-201ENST00000253024 COTL1Q14019 142 aa16.29■□□□□ 0.2
TRIM28-201ENST00000253024 RPS20P60866 119 aaKnown RBP16.28■□□□□ 0.2
TRIM28-201ENST00000253024 C1orf122Q6ZSJ8 110 aa16.28■□□□□ 0.2
TRIM28-201ENST00000253024 GATD1Q8NB37 220 aa16.28■□□□□ 0.2
TRIM28-201ENST00000253024 OR2K2Q8NGT1 345 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms