RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 PLNP26678 52 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 RNF151Q2KHN1 245 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 C9orf47Q6ZRZ4 202 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 LCNL1Q6ZST4 164 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 LHFPL4Q7Z7J7 247 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 FAM110DQ8TAY7 271 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 MRAP2Q96G30 205 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 VKORC1Q9BQB6 163 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 U3KQE9 123 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 KNTC1P50748 2209 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 IGHV3-21A0A0B4J1V1 117 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 BRI3O95415 125 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 ZNF80P51504 273 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 SAMD5Q5TGI4 173 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 ERASQ7Z444 233 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 CEND1Q8N111 149 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 Q8NA96 180 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 VGLL1Q99990 258 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 MCRIP2Q9BUT9 160 aaKnown RBP4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 SPCS1Q9Y6A9 102 aa4.44□□□□□ -1.7
CCDC88A-203ENST00000412148 A0A087WX48 190 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 TRBV7-9A0A0J9YWB2 115 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 NDUFS8O00217 210 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 RPL32P62910 135 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 WFDC3Q8IUB2 231 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 LINC00528Q8N1L1 170 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 POM121L12Q8N7R1 296 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 NRACQ8N912 160 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 ZNF502Q8TBZ5 544 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 CHAC1Q9BUX1 264 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 TRBV25-1A0A075B6N4 114 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 BUB3O43684 328 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 LEPP41159 167 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 CRIP2P52943 208 aaPredicted RBP4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 PCP2Q8IVA1 136 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 DKK2Q9UBU2 259 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 IGKV2-40A0A087WW87 121 aaPredicted RBP4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 IGHV7-4-1A0A0J9YVY3 117 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 LOC389332A0A1B0GUA5 103 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 TMEM238C9JI98 176 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 H0Y8G0 127 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 M0R381 172 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 KLK10O43240 276 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 GHRHP01286 108 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 IGKV2D-40P01614 121 aaPredicted RBP4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 LAGE3Q14657 143 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 PRSS57Q6UWY2 283 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 DTX2Q86UW9 622 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 C20orf78Q9BR46 151 aa4.43□□□□□ -1.7
CCDC88A-203ENST00000412148 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 APELAP0DMC3 54 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 APRG1Q8IVJ8 170 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 TIMD4Q96H15 378 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 TRIOBPQ9H2D6 2365 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 IGKV2D-26A0A0A0MRZ7 120 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 J3QR89 54 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 SAP30O75446 220 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 PPP1R17O96001 155 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 COX7A1P24310 79 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 C11orf71Q6IPW1 123 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 DYNAPQ8N1N2 210 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 ATP6V0E2Q8NHE4 81 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 SPATA25Q9BR10 227 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 FRYQ5TBA9 3013 aa4.42□□□□□ -1.7
CCDC88A-203ENST00000412148 TRBV7-3A0A075B6L6 115 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 TRBV7-1A0A0A6YYK4 115 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 IGHV7-81A0A0B4J1V7 117 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 IGKV3D-20A0A0C4DH25 116 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 NMUP48645 174 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 FXYD2P54710 66 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 NDPQ00604 133 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 ORMDL2Q53FV1 153 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 PRR31Q5SQ13 230 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 MYOZ3Q8TDC0 251 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 TMEM158Q8WZ71 300 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 CLPSL1A2RUU4 121 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 F8VRH5 84 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 CIDEAO60543 219 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 NXPH4O95158 308 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 UQCRFS1P47985 274 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 VMO1Q7Z5L0 202 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 Q8N9W7 124 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 TPPP3Q9BW30 176 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 ONECUT1Q9UBC0 465 aa4.41□□□□□ -1.7
CCDC88A-203ENST00000412148 A0A1W2PRD5 423 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 A0A1W2PRF3 423 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 A0A1W2PRM7 423 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 TMEM8BA6NDV4 472 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 IGLL5B9A064 214 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 H7C1H1 209 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 ORM1P02763 201 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 C19orf54Q5BKX5 351 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 ZC2HC1BQ5TFG8 222 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 TOMM6Q96B49 74 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 SIRPDQ9H106 197 aa4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 SPANXB1Q9NS25 103 aaPredicted RBP4.4□□□□□ -1.7
CCDC88A-203ENST00000412148 TRAV8-2A0A0B4J237 113 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 IGHV1-69DA0A0B4J2H0 117 aa4.4□□□□□ -1.71
CCDC88A-203ENST00000412148 FAM90A27PA6NNH2 459 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 131.9 ms