RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 DNLZQ5SXM8 178 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 C1orf162Q8NEQ5 155 aaPredicted RBP6.87□□□□□ -1.31
USP40-203ENST00000427112 OR10AG1Q8NH19 301 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 TSSC4Q9Y5U2 329 aaPredicted RBP6.87□□□□□ -1.31
USP40-203ENST00000427112 ITPR1Q14643 2758 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 FLNCQ14315 2725 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 MBD3L4A6NDZ8 208 aaPredicted RBP6.87□□□□□ -1.31
USP40-203ENST00000427112 MBD3L3A6NE82 208 aaPredicted RBP6.87□□□□□ -1.31
USP40-203ENST00000427112 MBD3L5A6NJ08 208 aaPredicted RBP6.87□□□□□ -1.31
USP40-203ENST00000427112 A8MWL6 223 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 ORM1P02763 201 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 ZNF883P0CG24 379 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 PAX2Q02962 417 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 FAM120AOSQ5T036 256 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 CFAP161Q6P656 301 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 C1orf122Q6ZSJ8 110 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 RNF182Q8N6D2 247 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 MBD3L2Q8NHZ7 208 aaPredicted RBP6.87□□□□□ -1.31
USP40-203ENST00000427112 MAP1LC3CQ9BXW4 147 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 SLC25A39Q9BZJ4 359 aaPredicted RBP6.87□□□□□ -1.31
USP40-203ENST00000427112 JMJD1CQ15652 2540 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 B5MCH6 92 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 D6R8Y8 96 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 SYS1-DBNDD2H3BUS1 97 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 PRSS1P07477 247 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 ERCC8Q13216 396 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 ECSCRQ19T08 205 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 FER1L6-AS1Q8NA97 138 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 OR5AN1Q8NGI8 311 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 RNASE6Q93091 150 aaKnown RBP6.87□□□□□ -1.31
USP40-203ENST00000427112 ABCA2Q9BZC7 2435 aa6.87□□□□□ -1.31
USP40-203ENST00000427112 IGHV1-69-2A0A0G2JMI3 117 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP6.86□□□□□ -1.31
USP40-203ENST00000427112 PSMB11A5LHX3 300 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 Q1RN00 199 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 ZNF833PQ6ZTB9 187 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 PPP1R27Q86WC6 154 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 LRRK2Q5S007 2527 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 IGHV2-26A0A0B4J1V2 119 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 CACNG7P62955 275 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 JKAMPQ9P055 326 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 NAV2Q8IVL1 2488 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 ESDP10768 282 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 CRYBA4P53673 196 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 TWIST1Q15672 202 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 SIGLEC9Q9Y336 463 aa6.86□□□□□ -1.31
USP40-203ENST00000427112 PIEZO1Q92508 2521 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 IGHV1-3A0A0C4DH29 117 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 EMP1P54849 157 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 CDSNQ15517 529 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 LYZL1Q6UWQ5 148 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 TMEM167AQ8TBQ9 72 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 TRBV9A0A0B4J1U6 114 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 AGRNO00468 2067 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 TRAV26-2A0A0B4J265 109 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 FAM231BA6NCW3 169 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 FAM90A9PA6NNJ1 464 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 VSTM5A8MXK1 200 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 NDPQ00604 133 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 MEF2CQ06413 473 aaPredicted RBP6.85□□□□□ -1.31
USP40-203ENST00000427112 C5orf17Q8NAS9 161 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 NOTCH2Q04721 2471 aa6.85□□□□□ -1.31
USP40-203ENST00000427112 TRAV8-6A0A0B4J262 113 aa6.84□□□□□ -1.31
USP40-203ENST00000427112 ETDBQ3ZM63 59 aa6.84□□□□□ -1.31
USP40-203ENST00000427112 RBPMS2Q6ZRY4 209 aaKnown RBP6.84□□□□□ -1.31
USP40-203ENST00000427112 Q86TA4 180 aa6.84□□□□□ -1.31
USP40-203ENST00000427112 ZNF48Q96MX3 618 aaPredicted RBP6.84□□□□□ -1.31
USP40-203ENST00000427112 MRPL32Q9BYC8 188 aaKnown RBP6.84□□□□□ -1.31
USP40-203ENST00000427112 AP5S1Q9NUS5 200 aa6.84□□□□□ -1.31
USP40-203ENST00000427112 UFC1Q9Y3C8 167 aa6.84□□□□□ -1.31
USP40-203ENST00000427112 PCP2Q8IVA1 136 aa6.84□□□□□ -1.31
USP40-203ENST00000427112 ZNF436-AS1Q8NC38 126 aaPredicted RBP6.84□□□□□ -1.31
USP40-203ENST00000427112 RAB9BQ9NP90 201 aa6.84□□□□□ -1.31
USP40-203ENST00000427112 CCL21O00585 134 aa6.84□□□□□ -1.32
USP40-203ENST00000427112 IGKV1-17P01599 117 aa6.84□□□□□ -1.32
USP40-203ENST00000427112 CT45A10P0DMU9 189 aa6.84□□□□□ -1.32
USP40-203ENST00000427112 GP9P14770 177 aa6.84□□□□□ -1.32
USP40-203ENST00000427112 OR4F17Q8NGA8 305 aa6.84□□□□□ -1.32
USP40-203ENST00000427112 CACNG8Q8WXS5 425 aa6.84□□□□□ -1.32
USP40-203ENST00000427112 ATP6V0BQ99437 205 aa6.84□□□□□ -1.32
USP40-203ENST00000427112 VGLL1Q99990 258 aa6.84□□□□□ -1.32
USP40-203ENST00000427112 NHP2Q9NX24 153 aaKnown RBP6.84□□□□□ -1.32
USP40-203ENST00000427112 PSG8Q9UQ74 426 aa6.84□□□□□ -1.32
USP40-203ENST00000427112 HLA-DRB1P01911 266 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 GPR183P32249 361 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 CRIP1P50238 77 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 RPL11P62913 178 aaKnown RBP6.83□□□□□ -1.32
USP40-203ENST00000427112 GLMPQ8WWB7 406 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 HIF1ANQ9NWT6 349 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 A0A1B0GUT8 65 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 K7ERJ3 54 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 DKK2Q9UBU2 259 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 IGLC1P0CG04 106 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 SRD5A1P18405 259 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 CSN1S1P47710 185 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 HERV-K104P63124 156 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 TMEM249Q2WGJ8 235 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 FAM57AQ8TBR7 257 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 C1RLQ9NZP8 487 aa6.83□□□□□ -1.32
USP40-203ENST00000427112 COL27A1Q8IZC6 1860 aaPredicted RBP6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms