RNA–Protein interactions for RNA: ENST00000332395.6

DDX28-201, Transcript of DEAD-box helicase 28, humanhuman

APPRIS P1 BASIC

Gene DDX28, Length 2,169 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28-201ENST00000332395 ASCL2Q99929 193 aa13.54□□□□□ -0.24
DDX28-201ENST00000332395 SSBP4Q9BWG4 385 aaPredicted RBP13.54□□□□□ -0.24
DDX28-201ENST00000332395 SOX21Q9Y651 276 aaPredicted RBP13.54□□□□□ -0.24
DDX28-201ENST00000332395 FAM231BA6NCW3 169 aa13.53□□□□□ -0.24
DDX28-201ENST00000332395 C3orf79P0CE67 100 aa13.53□□□□□ -0.24
DDX28-201ENST00000332395 HBBP68871 147 aa13.53□□□□□ -0.24
DDX28-201ENST00000332395 BRD3OSQ6XYD6 125 aa13.53□□□□□ -0.24
DDX28-201ENST00000332395 RBPMS2Q6ZRY4 209 aaKnown RBP13.53□□□□□ -0.24
DDX28-201ENST00000332395 NIT1Q86X76 327 aa13.53□□□□□ -0.24
DDX28-201ENST00000332395 PGLYRP4Q96LB8 373 aa13.53□□□□□ -0.24
DDX28-201ENST00000332395 IGHV3OR16-8A0A075B7F1 116 aa13.52□□□□□ -0.24
DDX28-201ENST00000332395 CLEC3BP05452 202 aa13.52□□□□□ -0.24
DDX28-201ENST00000332395 PSG9Q00887 426 aa13.52□□□□□ -0.24
DDX28-201ENST00000332395 C16orf54Q6UWD8 224 aa13.52□□□□□ -0.24
DDX28-201ENST00000332395 OR2D3Q8NGH3 330 aa13.52□□□□□ -0.24
DDX28-201ENST00000332395 C18orf32Q8TCD1 76 aa13.52□□□□□ -0.24
DDX28-201ENST00000332395 MOB4Q9Y3A3 225 aa13.52□□□□□ -0.24
DDX28-201ENST00000332395 DOPEY1Q5JWR5 2465 aa13.52□□□□□ -0.24
DDX28-201ENST00000332395 C20orf202A1L168 122 aa13.52□□□□□ -0.25
DDX28-201ENST00000332395 ANKRD39Q53RE8 183 aa13.52□□□□□ -0.25
DDX28-201ENST00000332395 KLHDC1Q8N7A1 406 aa13.52□□□□□ -0.25
DDX28-201ENST00000332395 ZFHX3Q15911 3703 aa13.52□□□□□ -0.25
DDX28-201ENST00000332395 FLNCQ14315 2725 aa13.51□□□□□ -0.25
DDX28-201ENST00000332395 IGHV4-30-2A0A087WSY4 118 aa13.51□□□□□ -0.25
DDX28-201ENST00000332395 CSN1S1P47710 185 aa13.51□□□□□ -0.25
DDX28-201ENST00000332395 CCDC140Q96MF4 163 aa13.51□□□□□ -0.25
DDX28-201ENST00000332395 S100A7P31151 101 aa13.51□□□□□ -0.25
DDX28-201ENST00000332395 PIFOQ8TCI5 191 aa13.51□□□□□ -0.25
DDX28-201ENST00000332395 ZFAND3Q9H8U3 227 aa13.51□□□□□ -0.25
DDX28-201ENST00000332395 SMAD5-AS1Q9Y6J3 95 aa13.51□□□□□ -0.25
DDX28-201ENST00000332395 CACNA1BQ00975 2339 aa13.5□□□□□ -0.25
DDX28-201ENST00000332395 CCL25O15444 150 aa13.5□□□□□ -0.25
DDX28-201ENST00000332395 ACACBO00763 2458 aa13.5□□□□□ -0.25
DDX28-201ENST00000332395 SERTM2A0A1B0GWG4 89 aa13.49□□□□□ -0.25
DDX28-201ENST00000332395 CLEC19AQ6UXS0 136 aa13.49□□□□□ -0.25
DDX28-201ENST00000332395 ALKBH7Q9BT30 221 aaPredicted RBP13.49□□□□□ -0.25
DDX28-201ENST00000332395 IGHV4-38-2P0DP08 117 aa13.49□□□□□ -0.25
DDX28-201ENST00000332395 CRIP1P50238 77 aa13.49□□□□□ -0.25
DDX28-201ENST00000332395 PTTG1IPP53801 180 aa13.49□□□□□ -0.25
DDX28-201ENST00000332395 EEF1AKMT3Q96AZ1 226 aa13.49□□□□□ -0.25
DDX28-201ENST00000332395 MEGF9Q9H1U4 602 aa13.49□□□□□ -0.25
DDX28-201ENST00000332395 MRPS16Q9Y3D3 137 aaKnown RBP13.49□□□□□ -0.25
DDX28-201ENST00000332395 USP9XQ93008 2570 aaPredicted RBP13.49□□□□□ -0.25
DDX28-201ENST00000332395 KLF5Q13887 457 aaPredicted RBP13.48□□□□□ -0.25
DDX28-201ENST00000332395 PRR31Q5SQ13 230 aa13.48□□□□□ -0.25
DDX28-201ENST00000332395 FAM19A2Q8N3H0 131 aa13.48□□□□□ -0.25
DDX28-201ENST00000332395 C8orf49Q96NF6 230 aa13.48□□□□□ -0.25
DDX28-201ENST00000332395 TSPOP30536 169 aa13.48□□□□□ -0.25
DDX28-201ENST00000332395 FOXA3P55318 350 aaPredicted RBP13.48□□□□□ -0.25
DDX28-201ENST00000332395 BORCS7Q96B45 105 aa13.48□□□□□ -0.25
DDX28-201ENST00000332395 IGKV2-40A0A087WW87 121 aaPredicted RBP13.47□□□□□ -0.25
DDX28-201ENST00000332395 TRBV7-1A0A0A6YYK4 115 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 TRAV41A0A0B4J266 112 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 CHEK1O14757 476 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 IGKV2D-40P01614 121 aaPredicted RBP13.47□□□□□ -0.25
DDX28-201ENST00000332395 APOHP02749 345 aaPredicted RBP13.47□□□□□ -0.25
DDX28-201ENST00000332395 CT45A10P0DMU9 189 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 RBX1P62877 108 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 PMCHL1Q16048 86 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 RNASE8Q8TDE3 154 aaKnown RBP13.47□□□□□ -0.25
DDX28-201ENST00000332395 CELSR1Q9NYQ6 3014 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 BUB3O43684 328 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 MSMBP08118 114 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 RAB9AP51151 201 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 C19orf54Q5BKX5 351 aa13.47□□□□□ -0.25
DDX28-201ENST00000332395 CLPSL1A2RUU4 121 aa13.46□□□□□ -0.25
DDX28-201ENST00000332395 HAX1O00165 279 aa13.46□□□□□ -0.25
DDX28-201ENST00000332395 IGFL4Q6B9Z1 124 aa13.46□□□□□ -0.25
DDX28-201ENST00000332395 LINC00527Q9UJ94 153 aa13.46□□□□□ -0.25
DDX28-201ENST00000332395 IGHG4P01861 327 aa13.45□□□□□ -0.26
DDX28-201ENST00000332395 NTF3P20783 257 aa13.45□□□□□ -0.26
DDX28-201ENST00000332395 HINT1P49773 126 aaPredicted RBP13.45□□□□□ -0.26
DDX28-201ENST00000332395 CRIP2P52943 208 aaPredicted RBP13.45□□□□□ -0.26
DDX28-201ENST00000332395 UBE2V1Q13404 147 aa13.45□□□□□ -0.26
DDX28-201ENST00000332395 COX11Q9Y6N1 276 aa13.45□□□□□ -0.26
DDX28-201ENST00000332395 HLA-DMBP28068 263 aa13.45□□□□□ -0.26
DDX28-201ENST00000332395 ATP5G2Q06055 141 aa13.45□□□□□ -0.26
DDX28-201ENST00000332395 MAJINQ3KP22 176 aa13.45□□□□□ -0.26
DDX28-201ENST00000332395 ATOH7Q8N100 152 aa13.45□□□□□ -0.26
DDX28-201ENST00000332395 A0A087X0K7 114 aa13.44□□□□□ -0.26
DDX28-201ENST00000332395 K7EP13 123 aa13.44□□□□□ -0.26
DDX28-201ENST00000332395 ZNF738Q8NE65 137 aa13.44□□□□□ -0.26
DDX28-201ENST00000332395 SPG11Q96JI7 2443 aa13.44□□□□□ -0.26
DDX28-201ENST00000332395 A0A1B0GUT8 65 aa13.44□□□□□ -0.26
DDX28-201ENST00000332395 FBLL1A6NHQ2 334 aaKnown RBP13.44□□□□□ -0.26
DDX28-201ENST00000332395 LY6EQ16553 131 aa13.44□□□□□ -0.26
DDX28-201ENST00000332395 SAPCD1Q5SSQ6 148 aa13.44□□□□□ -0.26
DDX28-201ENST00000332395 LCN12Q6JVE5 192 aa13.44□□□□□ -0.26
DDX28-201ENST00000332395 NRGNQ92686 78 aa13.44□□□□□ -0.26
DDX28-201ENST00000332395 PRR25Q96S07 402 aa13.44□□□□□ -0.26
DDX28-201ENST00000332395 IGHV3-66A0A0C4DH42 116 aa13.43□□□□□ -0.26
DDX28-201ENST00000332395 FAM223BA6NKX1 122 aa13.43□□□□□ -0.26
DDX28-201ENST00000332395 HSBP1O75506 76 aa13.43□□□□□ -0.26
DDX28-201ENST00000332395 ARMS2P0C7Q2 107 aa13.43□□□□□ -0.26
DDX28-201ENST00000332395 COX8CQ7Z4L0 72 aa13.43□□□□□ -0.26
DDX28-201ENST00000332395 FAM223AQ8IWN6 122 aa13.43□□□□□ -0.26
DDX28-201ENST00000332395 TRAV9-2A0A087WT02 112 aa13.42□□□□□ -0.26
DDX28-201ENST00000332395 SH2D1AO60880 128 aa13.42□□□□□ -0.26
DDX28-201ENST00000332395 PRB1P04280 392 aa13.42□□□□□ -0.26
DDX28-201ENST00000332395 Q6ZVH6 145 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms