RNA–Protein interactions for RNA: ENST00000436978.5

PTPN13-204, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS P4 TSL 5 BASIC

Gene PTPN13, Length 8,573 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-204ENST00000436978 HIST2H2BFQ5QNW6 126 aaPredicted RBP12.87□□□□□ -0.35
PTPN13-204ENST00000436978 SPATA31B1PQ5VZV4 182 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 ZNF562Q6V9R5 426 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 HIST1H2BHQ93079 126 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 HIST1H2BNQ99877 126 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 HIST1H2BMQ99879 126 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 C11orf68Q9H3H3 251 aaKnown RBP12.87□□□□□ -0.35
PTPN13-204ENST00000436978 SS18Q15532 418 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 ZNF833PQ6ZTB9 187 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 ZNF329Q86UD4 541 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 TNRC6AQ8NDV7 1962 aaKnown RBP12.87□□□□□ -0.35
PTPN13-204ENST00000436978 IGHV3-73A0A0B4J1V6 119 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 RNASE2P10153 161 aaKnown RBP12.87□□□□□ -0.35
PTPN13-204ENST00000436978 TMEM14BQ9NUH8 114 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 LYL1P12980 280 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 Q96MF0 132 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 SPOCK3Q9BQ16 436 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 HSD52Q0P140 79 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 RPRMLQ8N4K4 120 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 TRBV24-1A0A075B6N3 115 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 SHANK2-AS3Q9BTD1 123 aa12.87□□□□□ -0.35
PTPN13-204ENST00000436978 CDK2AP2O75956 126 aa12.86□□□□□ -0.35
PTPN13-204ENST00000436978 JPT2Q9H910 190 aa12.86□□□□□ -0.35
PTPN13-204ENST00000436978 HGFACQ04756 655 aa12.86□□□□□ -0.35
PTPN13-204ENST00000436978 ZNF876PQ49A33 203 aa12.86□□□□□ -0.35
PTPN13-204ENST00000436978 NUP35Q8NFH5 326 aa12.86□□□□□ -0.35
PTPN13-204ENST00000436978 NTF4P34130 210 aa12.86□□□□□ -0.35
PTPN13-204ENST00000436978 APOC4P55056 127 aa12.86□□□□□ -0.35
PTPN13-204ENST00000436978 MCRIP2Q9BUT9 160 aaKnown RBP12.86□□□□□ -0.35
PTPN13-204ENST00000436978 NHP2Q9NX24 153 aaKnown RBP12.86□□□□□ -0.35
PTPN13-204ENST00000436978 C15orf62A8K5M9 175 aa12.86□□□□□ -0.35
PTPN13-204ENST00000436978 ETV2O00321 342 aaPredicted RBP12.86□□□□□ -0.35
PTPN13-204ENST00000436978 ATXN8Q156A1 80 aa12.86□□□□□ -0.35
PTPN13-204ENST00000436978 ABCA4P78363 2273 aa12.86□□□□□ -0.35
PTPN13-204ENST00000436978 UBE2CO00762 179 aa12.85□□□□□ -0.35
PTPN13-204ENST00000436978 LMO1P25800 156 aa12.85□□□□□ -0.35
PTPN13-204ENST00000436978 LINC01551Q86U37 167 aa12.85□□□□□ -0.35
PTPN13-204ENST00000436978 FXYD7P58549 80 aa12.85□□□□□ -0.35
PTPN13-204ENST00000436978 LHFPL4Q7Z7J7 247 aa12.85□□□□□ -0.35
PTPN13-204ENST00000436978 ROS1P08922 2347 aa12.85□□□□□ -0.35
PTPN13-204ENST00000436978 LY6G6EA0A0G2JKS1 128 aa12.85□□□□□ -0.35
PTPN13-204ENST00000436978 GSN-AS1Q9NRJ2 163 aa12.85□□□□□ -0.35
PTPN13-204ENST00000436978 U3KQA8 63 aa12.85□□□□□ -0.35
PTPN13-204ENST00000436978 RIF1Q5UIP0 2472 aaKnown RBP12.85□□□□□ -0.35
PTPN13-204ENST00000436978 DYSFO75923 2080 aa12.85□□□□□ -0.35
PTPN13-204ENST00000436978 A0A1B0GV72 72 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 LEPROTO15243 131 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 FAM90A2PQ658T7 463 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 CSTL1Q9H114 145 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 TRAV8-2A0A0B4J237 113 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 E9PQ18 207 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 IGKV1-16P04430 117 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 TMEM95Q3KNT9 176 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 KLF17Q5JT82 389 aaPredicted RBP12.84□□□□□ -0.35
PTPN13-204ENST00000436978 TMEM249Q2WGJ8 235 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 C1orf194Q5T5A4 169 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 IL17RELQ6ZVW7 336 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 ABCA1O95477 2261 aa12.84□□□□□ -0.35
PTPN13-204ENST00000436978 PRR30Q53SZ7 412 aaPredicted RBP12.84□□□□□ -0.35
PTPN13-204ENST00000436978 TRPT1Q86TN4 253 aaKnown RBP12.84□□□□□ -0.35
PTPN13-204ENST00000436978 NBL1P41271 181 aa12.83□□□□□ -0.35
PTPN13-204ENST00000436978 TEX36Q5VZQ5 186 aa12.83□□□□□ -0.35
PTPN13-204ENST00000436978 ERG28Q9UKR5 140 aa12.83□□□□□ -0.35
PTPN13-204ENST00000436978 LSM4Q9Y4Z0 139 aaKnown RBP12.83□□□□□ -0.35
PTPN13-204ENST00000436978 ORAOV1Q8WV07 137 aa12.83□□□□□ -0.36
PTPN13-204ENST00000436978 DOPEY2Q9Y3R5 2298 aa12.83□□□□□ -0.36
PTPN13-204ENST00000436978 IGHV3-64A0A075B6Q5 118 aa12.83□□□□□ -0.36
PTPN13-204ENST00000436978 SYNJ2BPP57105 145 aa12.83□□□□□ -0.36
PTPN13-204ENST00000436978 YPEL3P61236 119 aaPredicted RBP12.83□□□□□ -0.36
PTPN13-204ENST00000436978 RUSC1-AS1Q66K80 236 aa12.83□□□□□ -0.36
PTPN13-204ENST00000436978 CYTL1Q9NRR1 136 aa12.83□□□□□ -0.36
PTPN13-204ENST00000436978 NUP210LQ5VU65 1888 aa12.83□□□□□ -0.36
PTPN13-204ENST00000436978 A0A1W2PPI3 338 aa12.83□□□□□ -0.36
PTPN13-204ENST00000436978 RPP25LQ8N5L8 163 aaKnown RBP12.83□□□□□ -0.36
PTPN13-204ENST00000436978 CFHR2P36980 270 aa12.83□□□□□ -0.36
PTPN13-204ENST00000436978 SRSF4Q08170 494 aaKnown RBP12.83□□□□□ -0.36
PTPN13-204ENST00000436978 TRAV8-4A0A0B4J246 113 aa12.82□□□□□ -0.36
PTPN13-204ENST00000436978 C5orf63A6NC05 138 aa12.82□□□□□ -0.36
PTPN13-204ENST00000436978 H3BUT2 72 aa12.82□□□□□ -0.36
PTPN13-204ENST00000436978 ATP6V0E1O15342 81 aa12.82□□□□□ -0.36
PTPN13-204ENST00000436978 CEACAM8P31997 349 aaPredicted RBP12.82□□□□□ -0.36
PTPN13-204ENST00000436978 J3QKU1 62 aa12.82□□□□□ -0.36
PTPN13-204ENST00000436978 RHODO00212 210 aa12.82□□□□□ -0.36
PTPN13-204ENST00000436978 CD300EQ496F6 205 aaPredicted RBP12.82□□□□□ -0.36
PTPN13-204ENST00000436978 Q86TA4 180 aa12.82□□□□□ -0.36
PTPN13-204ENST00000436978 HAPLN4Q86UW8 402 aa12.82□□□□□ -0.36
PTPN13-204ENST00000436978 Q8TAT8 98 aa12.82□□□□□ -0.36
PTPN13-204ENST00000436978 USF3Q68DE3 2245 aa12.81□□□□□ -0.36
PTPN13-204ENST00000436978 LY6HO94772 140 aa12.81□□□□□ -0.36
PTPN13-204ENST00000436978 NDUFA4L2Q9NRX3 87 aa12.81□□□□□ -0.36
PTPN13-204ENST00000436978 NCR2O95944 276 aa12.81□□□□□ -0.36
PTPN13-204ENST00000436978 MRPL27Q9P0M9 148 aaKnown RBP12.81□□□□□ -0.36
PTPN13-204ENST00000436978 KLHDC3Q9BQ90 382 aa12.81□□□□□ -0.36
PTPN13-204ENST00000436978 ATRAIDQ6UW56 229 aa12.81□□□□□ -0.36
PTPN13-204ENST00000436978 PAX4O43316 350 aa12.81□□□□□ -0.36
PTPN13-204ENST00000436978 LINC00311Q8N616 119 aa12.81□□□□□ -0.36
PTPN13-204ENST00000436978 PIP4P1Q86T03 277 aa12.8□□□□□ -0.36
PTPN13-204ENST00000436978 MYMXA0A1B0GTQ4 84 aa12.8□□□□□ -0.36
PTPN13-204ENST00000436978 F8WEM9 126 aa12.8□□□□□ -0.36
PTPN13-204ENST00000436978 UBE2E2Q96LR5 201 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms