RNA–Protein interactions for RNA: ENST00000395898.3

VPS13C-204, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 11,012 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-204ENST00000395898 ALPK3Q96L96 1907 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 PCNX3Q9H6A9 2034 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 TRGV1A0A0A0MS02 117 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 TRAV8-4A0A0B4J246 113 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 WFDC1Q9HC57 220 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 PRTN3P24158 256 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 GFI1BQ5VTD9 330 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 FOXL2NBQ6ZUU3 175 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 GLRX5Q86SX6 157 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 TRAV5A0A0B4J249 113 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 LOC105371267A0A1B0GV96 52 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 FCN3O75636 299 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 IGKV1-5P01602 117 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 C6orf226Q5I0X4 101 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 LCNL1Q6ZST4 164 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 UBE2DNLQ8IWF7 75 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 BPESC1Q9GZL8 116 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 LIME1Q9H400 295 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 MSRB2Q9Y3D2 182 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 IGKV1D-17A0A075B6S4 117 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 A0A087WV48 116 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 SS18Q15532 418 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 ASCL4Q6XD76 172 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 TMEM14BQ9NUH8 114 aa4.45□□□□□ -1.7
VPS13C-204ENST00000395898 MED12LQ86YW9 2145 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 LINC00473A8K010 186 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 LEPROTO15243 131 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 PLXNB1O43157 2135 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 PSCAO43653 123 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 UBE2E1P51965 193 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 B3GALT5-AS1P59052 145 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 LYZL1Q6UWQ5 148 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 SIGMAR1Q99720 223 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 LMO1P25800 156 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 NTF4P34130 210 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 K7ENP7 123 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 CDK2AP2O75956 126 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 GNLYP22749 145 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 KLRD1Q13241 179 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 ZNF479Q96JC4 524 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 FOXG1P55316 489 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-204ENST00000395898 LINC00527Q9UJ94 153 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 SH2D1AO60880 128 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 RASL10AQ92737 203 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 VSIRQ9H7M9 311 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 CRIM1Q9NZV1 1036 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 IGKV1-16P04430 117 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 NDPQ00604 133 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 SRSF4Q08170 494 aaKnown RBP4.44□□□□□ -1.7
VPS13C-204ENST00000395898 IGHV3-64A0A075B6Q5 118 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 PAX4O43316 350 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 MSMBP08118 114 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 CD300EQ496F6 205 aaPredicted RBP4.44□□□□□ -1.7
VPS13C-204ENST00000395898 TMEM249Q2WGJ8 235 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 HIST3H2BBQ8N257 126 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 GATD1Q8NB37 220 aa4.44□□□□□ -1.7
VPS13C-204ENST00000395898 MRPL52Q86TS9 123 aaKnown RBP4.43□□□□□ -1.7
VPS13C-204ENST00000395898 CYTL1Q9NRR1 136 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 C15orf62A8K5M9 175 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 SELLP14151 372 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 C10orf55Q5SWW7 151 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 IGFL3Q6UXB1 125 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 TRPT1Q86TN4 253 aaKnown RBP4.43□□□□□ -1.7
VPS13C-204ENST00000395898 CSTL1Q9H114 145 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 FAM231BA6NCW3 169 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 COLCA2A8K830 154 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 CXCL1P09341 107 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 SRSF2Q01130 221 aaKnown RBP4.43□□□□□ -1.7
VPS13C-204ENST00000395898 IL17RELQ6ZVW7 336 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 WFDC12Q8WWY7 111 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 MEGF9Q9H1U4 602 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 FAM90A2PQ658T7 463 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 MESP1Q9BRJ9 268 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 RHPN1-AS1Q9BWJ2 59 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 MALRD1Q5VYJ5 2156 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 PCDH15Q96QU1 1955 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 GATA4P43694 442 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 ZNF474Q6S9Z5 364 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-204ENST00000395898 NCOR1P1Q9H4R4 102 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 TRAV3A0A0B4J244 114 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 RNASE2P10153 161 aaKnown RBP4.43□□□□□ -1.7
VPS13C-204ENST00000395898 C1orf194Q5T5A4 169 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 BRD3OSQ6XYD6 125 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 MYMXA0A1B0GTQ4 84 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 E7EQL1 145 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 RHODO00212 210 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 LSM4Q9Y4Z0 139 aaKnown RBP4.43□□□□□ -1.7
VPS13C-204ENST00000395898 SFTA2Q6UW10 78 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 DLX4Q92988 240 aaPredicted RBP4.43□□□□□ -1.7
VPS13C-204ENST00000395898 TNCP24821 2201 aa4.43□□□□□ -1.7
VPS13C-204ENST00000395898 SYS1-DBNDD2H3BUS1 97 aa4.42□□□□□ -1.7
VPS13C-204ENST00000395898 GUSBP1Q15486 140 aa4.42□□□□□ -1.7
VPS13C-204ENST00000395898 SPATA31B1PQ5VZV4 182 aa4.42□□□□□ -1.7
VPS13C-204ENST00000395898 DSCAMO60469 2012 aa4.42□□□□□ -1.7
VPS13C-204ENST00000395898 J3QLI3 93 aa4.42□□□□□ -1.7
VPS13C-204ENST00000395898 CT83Q5H943 113 aa4.42□□□□□ -1.7
VPS13C-204ENST00000395898 BCL6BQ8N143 479 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-204ENST00000395898 DEFB121Q5J5C9 76 aa4.42□□□□□ -1.7
VPS13C-204ENST00000395898 KLF17Q5JT82 389 aaPredicted RBP4.42□□□□□ -1.7
VPS13C-204ENST00000395898 TRAV8-1A0A0A6YYK1 113 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms