RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 SrstQ06666 185 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Vstm2aQ8R0A6 236 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ms4a3Q920C4 213 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Kcnmb2Q9CZM9 235 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 CrebbpP45481 2441 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Vmn1r149E9PWL6 307 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Vmn1r101E9Q365 307 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Vmn1r158G3UY92 307 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Tmem184aQ3UFJ6 425 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Degs2Q8R2F2 323 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 HpxQ91X72 460 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Cacna1hO88427 2365 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gm4787B2RUD9 748 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Zfp108E9Q8I5 642 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 AtraidQ6PGD0 223 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr94Q6UAH0 386 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gm16503Q8C6M9 103 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Chrdl2Q8VEA6 426 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gm28305F6U473 122 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Hoxa6P09092 232 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 CebpdQ00322 268 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Hide1Q75VT8 222 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 AdtrpQ8C138 230 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Q9CR34 168 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Zpld1Q8BGZ8 415 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 AamdcQ8R0P4 122 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Rab11fip5Q8R361 645 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr279Q8VFD8 310 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Prss28Q924N9 274 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Rer1Q9CQU3 196 aaKnown RBP13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Xrcc3Q9CXE6 349 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Cacna1iE9Q7P2 2199 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Tcrg-V5A0A0G2JGV5 113 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr1024A2ASU7 327 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ifitm5O88728 134 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Klf2Q60843 354 aaKnown RBP13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr1179A2AUS6 307 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Cks1brtQ3UNC9 96 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 OpalinQ7M750 143 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Mrpl13Q9D1P0 178 aaKnown RBP13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Reg4Q9D8G5 157 aa13.28□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gm20830J3KML6 227 aa13.27□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Mesp1P97309 243 aa13.27□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gm614Q3V2K1 191 aa13.27□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Nus1Q99LJ8 297 aa13.27□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Bcl2l10Q9Z0F3 191 aa13.27□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Dock4P59764 1978 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Igkv6-14A0A140T8P1 115 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Gm43517E9PYS1 339 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Lbhd2G3UW55 114 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Siah2Q06986 325 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Lipt2Q9D009 231 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Ttc32Q9DAC7 148 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Dnajb12Q9QYI4 376 aaKnown RBP13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Srsf10Q9R0U0 262 aaKnown RBP13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Trav12-1A0N8R1 115 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Scgb2a2J3KMP9 96 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Zfp977L7N2E7 438 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Hoxa3P02831 443 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Zfp36l2P23949 484 aaKnown RBP13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Rnf138Q9CQE0 245 aaKnown RBP13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Nubp1Q9R060 320 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Gpr34Q9R1K6 375 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Tnfaip6O08859 275 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Cxcl1P12850 96 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 SftpcP21841 193 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 GalnsQ571E4 520 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Rtp3Q5QGU6 474 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Olfr91Q7TRL3 312 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Prss33Q80WM7 277 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Tmem183Q9JJB9 375 aa13.27□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Exph5Q0VAV2 1960 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Igkv1-131A0A140T8M8 120 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 A730046J19RikA0A1B0GSN8 89 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 CfdP03953 259 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Wnt10aP70701 417 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Olfr1413Q8VGU3 323 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Ly6g6dQ9Z1Q3 135 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Olfr92L7N475 312 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Srsf6Q3TWW8 339 aaKnown RBP13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Tctn3Q8R2Q6 595 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Gm8251F6VUT6 1994 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Olfr753-ps1A0A140LHN3 164 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Hist1h1eP43274 219 aaKnown RBP13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Defa6P50704 93 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Ankrd33bQ3U0L2 486 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Nkain3Q3URJ8 181 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Olfr1383Q7TQT2 311 aa13.26□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Trav15-2-dv6-2A0A075B650 123 aa13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Zfp764E9QAP1 431 aa13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Olfr898L7N1Z5 316 aa13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Gm20816Q5FWD4 227 aa13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Btf3Q64152 204 aaKnown RBP13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Ociad1Q9CRD0 247 aaKnown RBP13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Trbv12-1A0A0B4J1H0 124 aa13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Olfr1098A2AVB0 315 aa13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Rpl24Q8BP67 157 aaKnown RBP13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Lrrc10Q8K3W2 274 aa13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Pbp2Q8VIN1 187 aa13.25□□□□□ -0.29
Ccdc88b-201ENSMUST00000113440 Coa3Q9D2R6 108 aa13.25□□□□□ -0.29
Retrieved 100 of 22,080 RNA–protein pairs in 124.1 ms