Protein–RNA interactions for Protein: Q3UNC9

Cks1brt, Cyclin-dependent kinases regulatory subunit, mousemouse

Predictions only

Length 96 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cks1brtQ3UNC9 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
Cks1brtQ3UNC9 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
Cks1brtQ3UNC9 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
Cks1brtQ3UNC9 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
Cks1brtQ3UNC9 Psd-208ENSMUST00000224556 2034 ntBASIC22.91■■□□□ 1.26
Cks1brtQ3UNC9 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Cks1brtQ3UNC9 Zxdb-201ENSMUST00000101388 5619 ntAPPRIS P1 BASIC22.53■■□□□ 1.2
Cks1brtQ3UNC9 Cxxc4-203ENSMUST00000181904 5694 ntAPPRIS P2 TSL 5 BASIC22.5■■□□□ 1.19
Cks1brtQ3UNC9 Adgrb2-207ENSMUST00000120204 5170 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Cks1brtQ3UNC9 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
Cks1brtQ3UNC9 Hnrnpd-201ENSMUST00000019128 2000 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
Cks1brtQ3UNC9 Gm25239-201ENSMUST00000174915 86 ntBASIC21.83■■□□□ 1.09
Cks1brtQ3UNC9 Tmem165-201ENSMUST00000031144 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Cks1brtQ3UNC9 Six2-202ENSMUST00000163568 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Cks1brtQ3UNC9 Rab12-201ENSMUST00000070538 2057 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Cks1brtQ3UNC9 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Cks1brtQ3UNC9 Mbd2-201ENSMUST00000074058 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Cks1brtQ3UNC9 Iffo2-203ENSMUST00000174078 5716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
Cks1brtQ3UNC9 Dyrk1a-202ENSMUST00000119878 5759 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
Cks1brtQ3UNC9 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
Cks1brtQ3UNC9 Gm12100-201ENSMUST00000150255 1933 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Cks1brtQ3UNC9 Wtip-201ENSMUST00000038537 1962 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Cks1brtQ3UNC9 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Cks1brtQ3UNC9 Sec63-201ENSMUST00000019937 6032 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Cks1brtQ3UNC9 Msantd2-201ENSMUST00000048604 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Cks1brtQ3UNC9 Ube2ql1-201ENSMUST00000065118 2674 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Cks1brtQ3UNC9 Pabpn1-202ENSMUST00000116476 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Cks1brtQ3UNC9 Zswim6-201ENSMUST00000105097 5456 ntTSL 5 BASIC20.92■□□□□ 0.94
Cks1brtQ3UNC9 Gm26588-201ENSMUST00000181064 2098 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Cks1brtQ3UNC9 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC20.9■□□□□ 0.94
Cks1brtQ3UNC9 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Cks1brtQ3UNC9 Pabpn1-207ENSMUST00000150975 1775 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Cks1brtQ3UNC9 Gm42596-201ENSMUST00000196305 1958 ntBASIC20.85■□□□□ 0.93
Cks1brtQ3UNC9 Six2-201ENSMUST00000024947 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
Cks1brtQ3UNC9 Six3-202ENSMUST00000175898 2419 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.92
Cks1brtQ3UNC9 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC20.81■□□□□ 0.92
Cks1brtQ3UNC9 Poldip2-201ENSMUST00000001127 2054 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Cks1brtQ3UNC9 Sh3glb2-204ENSMUST00000113621 1851 ntTSL 5 BASIC20.73■□□□□ 0.91
Cks1brtQ3UNC9 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Cks1brtQ3UNC9 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cks1brtQ3UNC9 Sept3-202ENSMUST00000116423 2467 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Cks1brtQ3UNC9 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Cks1brtQ3UNC9 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
Cks1brtQ3UNC9 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Cks1brtQ3UNC9 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Cks1brtQ3UNC9 Cnnm3-202ENSMUST00000097776 5292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Cks1brtQ3UNC9 Gm10524-201ENSMUST00000181931 1893 ntBASIC20.42■□□□□ 0.86
Cks1brtQ3UNC9 Epcam-201ENSMUST00000053577 2040 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
Cks1brtQ3UNC9 Brsk2-203ENSMUST00000078200 2363 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cks1brtQ3UNC9 Cdk9-201ENSMUST00000009699 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Cks1brtQ3UNC9 Ldb1-208ENSMUST00000185355 2088 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Cks1brtQ3UNC9 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
Cks1brtQ3UNC9 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Cks1brtQ3UNC9 Cyhr1-203ENSMUST00000176274 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Cks1brtQ3UNC9 Dlg1-203ENSMUST00000100001 4711 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Cks1brtQ3UNC9 Nfix-202ENSMUST00000099070 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Cks1brtQ3UNC9 Ppp2r5c-206ENSMUST00000222276 1802 ntTSL 2 BASIC20.22■□□□□ 0.83
Cks1brtQ3UNC9 Stk24-201ENSMUST00000079817 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Cks1brtQ3UNC9 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
Cks1brtQ3UNC9 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cks1brtQ3UNC9 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
Cks1brtQ3UNC9 Gm15042-201ENSMUST00000120212 883 ntBASIC20.13■□□□□ 0.81
Cks1brtQ3UNC9 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
Cks1brtQ3UNC9 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Cks1brtQ3UNC9 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC20.07■□□□□ 0.8
Cks1brtQ3UNC9 Samd1-201ENSMUST00000095228 2071 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
Cks1brtQ3UNC9 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
Cks1brtQ3UNC9 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Cks1brtQ3UNC9 Nfic-204ENSMUST00000117966 1655 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cks1brtQ3UNC9 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Cks1brtQ3UNC9 Ccm2l-201ENSMUST00000109800 2158 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Cks1brtQ3UNC9 Rrnad1-207ENSMUST00000160143 1568 ntTSL 5 BASIC19.9■□□□□ 0.78
Cks1brtQ3UNC9 Wsb2-201ENSMUST00000031309 2421 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Cks1brtQ3UNC9 Rundc3a-201ENSMUST00000006750 2046 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Cks1brtQ3UNC9 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cks1brtQ3UNC9 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cks1brtQ3UNC9 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Cks1brtQ3UNC9 Atp1b3-201ENSMUST00000034983 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cks1brtQ3UNC9 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cks1brtQ3UNC9 Sh3glb2-201ENSMUST00000028214 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cks1brtQ3UNC9 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Cks1brtQ3UNC9 St3gal5-201ENSMUST00000069994 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
Cks1brtQ3UNC9 Fam196a-201ENSMUST00000171394 2490 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Cks1brtQ3UNC9 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Cks1brtQ3UNC9 Gm15045-201ENSMUST00000117359 883 ntBASIC19.78■□□□□ 0.76
Cks1brtQ3UNC9 Nkx3-2-201ENSMUST00000060820 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Cks1brtQ3UNC9 Ap1ar-210ENSMUST00000200409 2580 ntTSL 5 BASIC19.73■□□□□ 0.75
Cks1brtQ3UNC9 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cks1brtQ3UNC9 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cks1brtQ3UNC9 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
Cks1brtQ3UNC9 Gm26859-201ENSMUST00000181743 1852 ntTSL 5 BASIC19.71■□□□□ 0.75
Cks1brtQ3UNC9 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Cks1brtQ3UNC9 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Cks1brtQ3UNC9 Ldb1-207ENSMUST00000156585 2014 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Cks1brtQ3UNC9 Fndc10-201ENSMUST00000099265 2140 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
Cks1brtQ3UNC9 Glt8d1-201ENSMUST00000022476 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Cks1brtQ3UNC9 Rab12-205ENSMUST00000167962 2010 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cks1brtQ3UNC9 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cks1brtQ3UNC9 Ccdc9-202ENSMUST00000118976 2175 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cks1brtQ3UNC9 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 54.1 ms