RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 Q86TA4 180 aa13.61□□□□□ -0.23
VPS53-215ENST00000573028 ZNF738Q8NE65 137 aa13.61□□□□□ -0.23
VPS53-215ENST00000573028 DLX6P56179 175 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 FAM120AOSQ5T036 256 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 TEX45Q8NA69 505 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 ARHGAP32A7KAX9 2087 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 CEP295Q9C0D2 2601 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 OR4F17Q8NGA8 305 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 ZNF292O60281 2723 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 TMSB15BA0A087X1C1 80 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 LOC102724200A0A096LPH7 203 aaPredicted RBP13.6□□□□□ -0.23
VPS53-215ENST00000573028 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.6□□□□□ -0.23
VPS53-215ENST00000573028 RPEQ96AT9 228 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 TMUB1Q9BVT8 246 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 CBY1Q9Y3M2 126 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 F11RQ9Y624 299 aaKnown RBP13.6□□□□□ -0.23
VPS53-215ENST00000573028 COX11Q9Y6N1 276 aa13.6□□□□□ -0.23
VPS53-215ENST00000573028 IGHV1-3A0A0C4DH29 117 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 IGHV1-69-2A0A0G2JMI3 117 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 VAMP3Q15836 100 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 FAM71F2Q6NXP2 309 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 GFRALQ6UXV0 394 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 MUC21A0A0G2JKD1 596 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 MUC21A0A140T8X8 626 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 HSBP1L1C9JCN9 74 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 SNAI2O43623 268 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 NUDT3O95989 172 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 ARMS2P0C7Q2 107 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 KLF17Q5JT82 389 aaPredicted RBP13.59□□□□□ -0.23
VPS53-215ENST00000573028 MUC21Q5SSG8 566 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 ASCL5Q7RTU5 278 aa13.59□□□□□ -0.23
VPS53-215ENST00000573028 IGLC1P0CG04 106 aa13.58□□□□□ -0.23
VPS53-215ENST00000573028 SFTPCP11686 197 aa13.58□□□□□ -0.23
VPS53-215ENST00000573028 TCTAP57738 103 aa13.58□□□□□ -0.23
VPS53-215ENST00000573028 E7EQL1 145 aa13.58□□□□□ -0.24
VPS53-215ENST00000573028 ORAOV1Q8WV07 137 aa13.58□□□□□ -0.24
VPS53-215ENST00000573028 M0R3E3 92 aa13.58□□□□□ -0.24
VPS53-215ENST00000573028 FAM162BQ5T6X4 162 aa13.58□□□□□ -0.24
VPS53-215ENST00000573028 OTORQ9NRC9 128 aa13.58□□□□□ -0.24
VPS53-215ENST00000573028 ABHD17AQ96GS6 310 aa13.57□□□□□ -0.24
VPS53-215ENST00000573028 ZC2HC1AQ96GY0 325 aa13.57□□□□□ -0.24
VPS53-215ENST00000573028 MAP1LC3CQ9BXW4 147 aa13.57□□□□□ -0.24
VPS53-215ENST00000573028 TMEM191AQ9H0A3 160 aa13.57□□□□□ -0.24
VPS53-215ENST00000573028 ZNF492Q9P255 531 aa13.57□□□□□ -0.24
VPS53-215ENST00000573028 TEX22C9J3V5 150 aa13.57□□□□□ -0.24
VPS53-215ENST00000573028 MUC15Q8N387 334 aa13.57□□□□□ -0.24
VPS53-215ENST00000573028 SERTM2A0A1B0GWG4 89 aa13.56□□□□□ -0.24
VPS53-215ENST00000573028 RNASE8Q8TDE3 154 aaKnown RBP13.56□□□□□ -0.24
VPS53-215ENST00000573028 CHCHD1Q96BP2 118 aaKnown RBP13.56□□□□□ -0.24
VPS53-215ENST00000573028 RALYQ9UKM9 306 aaKnown RBP13.56□□□□□ -0.24
VPS53-215ENST00000573028 LOC389332A0A1B0GUA5 103 aa13.56□□□□□ -0.24
VPS53-215ENST00000573028 CBY3A6NI87 242 aa13.56□□□□□ -0.24
VPS53-215ENST00000573028 TNFRSF13BO14836 293 aaPredicted RBP13.56□□□□□ -0.24
VPS53-215ENST00000573028 PCP4P48539 62 aa13.56□□□□□ -0.24
VPS53-215ENST00000573028 CT83Q5H943 113 aa13.56□□□□□ -0.24
VPS53-215ENST00000573028 SMIM12Q96EX1 92 aa13.56□□□□□ -0.24
VPS53-215ENST00000573028 HILPDAQ9Y5L2 63 aa13.56□□□□□ -0.24
VPS53-215ENST00000573028 BUB1B-PAK6H3BSN5 160 aa13.56□□□□□ -0.24
VPS53-215ENST00000573028 APOHP02749 345 aaPredicted RBP13.56□□□□□ -0.24
VPS53-215ENST00000573028 ONECUT1Q9UBC0 465 aa13.56□□□□□ -0.24
VPS53-215ENST00000573028 SOX21Q9Y651 276 aaPredicted RBP13.56□□□□□ -0.24
VPS53-215ENST00000573028 RELNP78509 3460 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 A0A1B0GUT8 65 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 IGKV1-17P01599 117 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 LIPFP07098 398 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 FCGR2BP31994 310 aaPredicted RBP13.55□□□□□ -0.24
VPS53-215ENST00000573028 UBE2V1Q13404 147 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 PRR30Q53SZ7 412 aaPredicted RBP13.55□□□□□ -0.24
VPS53-215ENST00000573028 SLC25A34Q6PIV7 304 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 OR4C5Q8NGB2 326 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 IGLV2-11P01706 119 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 IL4P05112 153 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 C8orf31Q8N9H6 132 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 PRSS3P2Q8NHM4 247 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 NGBQ9NPG2 151 aa13.55□□□□□ -0.24
VPS53-215ENST00000573028 ANKHD1Q8IWZ3 2542 aaKnown RBP13.55□□□□□ -0.24
VPS53-215ENST00000573028 PPIAL4CA0A0B4J2A2 164 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 PPIAL4GP0DN37 164 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 FXYD7P58549 80 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 BPIFA4PQ86YQ2 179 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 PPP1R14DQ9NXH3 145 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 LY6HO94772 140 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 IGLV1-47P01700 117 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 OR5AL1P0C617 328 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 FBLN7Q53RD9 439 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 BCL6BQ8N143 479 aaPredicted RBP13.54□□□□□ -0.24
VPS53-215ENST00000573028 GFRA4Q9GZZ7 299 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 ST20Q9HBF5 79 aa13.54□□□□□ -0.24
VPS53-215ENST00000573028 A0A087X0K7 114 aa13.53□□□□□ -0.24
VPS53-215ENST00000573028 SHISA9B4DS77 424 aa13.53□□□□□ -0.24
VPS53-215ENST00000573028 CRYGBP07316 175 aa13.53□□□□□ -0.24
VPS53-215ENST00000573028 RELQ04864 619 aaPredicted RBP13.53□□□□□ -0.24
VPS53-215ENST00000573028 HES1Q14469 280 aa13.53□□□□□ -0.24
VPS53-215ENST00000573028 SCNM1Q9BWG6 230 aa13.53□□□□□ -0.24
VPS53-215ENST00000573028 AP5S1Q9NUS5 200 aa13.53□□□□□ -0.24
VPS53-215ENST00000573028 RNF24Q9Y225 148 aa13.53□□□□□ -0.24
VPS53-215ENST00000573028 I3L2K1 104 aa13.53□□□□□ -0.24
VPS53-215ENST00000573028 TIMM23O14925 209 aa13.53□□□□□ -0.24
VPS53-215ENST00000573028 FA2HQ7L5A8 372 aa13.53□□□□□ -0.24
VPS53-215ENST00000573028 NDFIP1Q9BT67 221 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 106.7 ms