RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Cd8bP10300 213 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gnb2P62880 340 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Smim6Q3U0I6 56 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Q8VCE4 163 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Fbxw4Q9JMJ2 410 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gm15293D3YX02 93 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Lrrc52Q5M8M9 314 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ndfip1Q8R0W6 221 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ctag2Q9D9S4 219 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ctnnbip1Q9JJN6 81 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ccl8Q9Z121 97 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gm21244J3QK38 227 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 A3galt2Q3V1N9 370 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Plxna2P70207 1894 aa13.32□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Vma21-psA0A140T8R2 101 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Prr19B2RW88 366 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Lgals9O08573 353 aaKnown RBP13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 P01803 113 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 BsgP18572 389 aaKnown RBP13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr715Q8VG49 315 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr1404Q8VGE1 313 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Lurap1Q9D6I9 239 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Vmn1r63Q9EPT1 300 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ly96Q9JHF9 160 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ros1Q78DX7 2340 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Snrnp200Q6P4T2 2136 aaKnown RBP13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gm28044L7N1X0 119 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 H2-Ab1P01921 265 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 P06344 263 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 MgpP19788 104 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 GferP56213 198 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Tff1Q08423 87 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Dll1Q61483 722 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Q6DIA7 600 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Lsm11Q8BUV6 361 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr1265Q8VEZ3 309 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Cyb5r3Q9DCN2 301 aaKnown RBP13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Phf3B2RQG2 2025 aaKnown RBP13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Zfp972A2AW65 139 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 TfpiO54819 306 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Sult1a1P52840 291 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 OsmP53347 263 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Rnd3P61588 244 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Vmn1r181Q0P547 304 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Zfp386Q1WWJ5 626 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Lyplal1Q3UFF7 239 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gpr4Q8BUD0 365 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Cnot1Q6ZQ08 2375 aaKnown RBP13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 GzmbP04187 247 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Rspo3Q2TJ95 277 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Fam174bQ8K064 153 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Prss45Q8K4I7 317 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Cacng8Q8VHW2 423 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Prss37Q9DAA4 237 aa13.31□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr467L7N455 308 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr1437Q7TQR7 312 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Znhit1Q8R331 154 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr76Q8VFV2 317 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Dppa2Q9CWH0 301 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Mad2l1bpQ9DCX1 276 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Vmn1r50Q9EP51 310 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Dolpp1Q9JMF7 238 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Esp38A8R0X1 80 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ube2l3P68037 154 aaKnown RBP13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Slc25a47Q6IS41 310 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr153Q7TR48 307 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 9130008F23RikQ9D2Z6 181 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Herpud1Q9JJK5 391 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Mbnl1Q9JKP5 341 aaKnown RBP13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Suclg1Q9WUM5 346 aaKnown RBP13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gm19345G3UYD9 124 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 FmodP50608 376 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Prdx2Q61171 198 aaKnown RBP13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr1181Q7TR18 311 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 9330161L09RikQ9D253 136 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Nlrc5C3VPR6 1915 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ceacam15A0A0B4J1L0 234 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ccl1P10146 92 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Bmpr1bP36898 502 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 CxadrP97792 365 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Col9a1Q05722 921 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 TctaQ8VEA7 122 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr1269Q8VEZ2 309 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Klf7Q99JB0 301 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 PyyQ9EPS2 98 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Prss8Q9ESD1 342 aa13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ndufa7Q9Z1P6 113 aaKnown RBP13.3□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Fgf11P70378 225 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 ShbgP97497 403 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Zglp1Q1WG82 266 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Cbln4Q8BME9 198 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr983Q8VG90 315 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 FibinQ9CQS3 217 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Ndufb8Q9D6J5 186 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gp2Q9D733 531 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Foxj2Q9ES18 565 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Cml3Q9JIY8 226 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Olfr284A0A0U1RP76 321 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Gm42517A0A1Y7VLQ2 374 aa13.29□□□□□ -0.28
Ccdc88b-201ENSMUST00000113440 Defa-rs1P17533 116 aa13.29□□□□□ -0.28
Retrieved 100 of 22,080 RNA–protein pairs in 81.6 ms