RNA–Protein interactions for RNA: ENST00000561391.1

SPG11-225, Transcript of SPG11, spatacsin vesicle trafficking associated, human

TSL 3

Gene SPG11, Length 629 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPG11-225	ENST00000561391	LENG1	Q96BZ8	264 aa	Predicted RBP	4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	ABHD8	Q96I13	439 aa		4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	KRTAP4-11	Q9BYQ6	195 aa		4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	JPH1	Q9HDC5	661 aa	Predicted RBP	4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	NMRK2	Q9NPI5	230 aa		4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	PCMTD2	Q9NV79	361 aa		4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	SCHIP1	Q9P0W5	487 aa	Predicted RBP	4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	ZNF232	Q9UNY5	417 aa		4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	GCC2	Q8IWJ2	1684 aa		4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	XRN1	Q8IZH2	1706 aa	Known RBP	4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	ROBO2	Q9HCK4	1378 aa		4.91	□□□□□ -1.62
SPG11-225	ENST00000561391	PCNT	O95613	3336 aa		4.9	□□□□□ -1.62
SPG11-225	ENST00000561391	THSD7A	Q9UPZ6	1657 aa		4.9	□□□□□ -1.62
SPG11-225	ENST00000561391	SSFA2	P28290	1259 aa		4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	WEE1	P30291	646 aa		4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	EPHA4	P54764	986 aa		4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	CHRNA2	Q15822	529 aa		4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	RHPN1	Q8TCX5	695 aa		4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	L3MBTL2	Q969R5	705 aa		4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	UBE2O	Q9C0C9	1292 aa	Known RBP	4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	RNF112	Q9ULX5	631 aa		4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	CHMP3	Q9Y3E7	222 aa		4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	USP19	O94966	1318 aa		4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	ADCY9	O60503	1353 aa		4.9	□□□□□ -1.63
SPG11-225	ENST00000561391	ABCC5	O15440	1437 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	DUOX2	Q9NRD8	1548 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	C21orf2	O43822	256 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	BRD1	O95696	1058 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	RGS19	P49795	217 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	NAA30	Q147X3	362 aa	Predicted RBP	4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	OCLN	Q16625	522 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	B4GALNT3	Q6L9W6	998 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	PHLDB3	Q6NSJ2	640 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	C20orf204	Q6ZNR8	217 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	NUDT8	Q8WV74	236 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	BHMT	Q93088	406 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	CEP63	Q96MT8	703 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	KRTAP4-5	Q9BYR2	181 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	IGFLR1	Q9H665	355 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	BRD7	Q9NPI1	651 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	PRDM11	Q9NQV5	511 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	CXXC1	Q9P0U4	656 aa	Predicted RBP	4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	HCN4	Q9Y3Q4	1203 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	KIF15	Q9NS87	1388 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	NRAP	Q86VF7	1730 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	TECPR2	O15040	1411 aa		4.89	□□□□□ -1.63
SPG11-225	ENST00000561391	ARHGEF5	Q12774	1597 aa		4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	ZBTB7C	A1YPR0	619 aa		4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	SERTM1	A2A2V5	107 aa		4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	FOXN1	O15353	648 aa		4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	IGFBP4	P22692	258 aa		4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	FSTL1	Q12841	308 aa		4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	TRIM26	Q12899	539 aa	Predicted RBP	4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	FKBP5	Q13451	457 aa	Predicted RBP	4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	CAPN12	Q6ZSI9	719 aa		4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	WAPL	Q7Z5K2	1190 aa		4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	FMR1NB	Q8N0W7	255 aa	Predicted RBP	4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	PRDM10	Q9NQV6	1147 aa		4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	GPC6	Q9Y625	555 aa	Predicted RBP	4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	TNS3	Q68CZ2	1445 aa		4.88	□□□□□ -1.63
SPG11-225	ENST00000561391	ABL1	P00519	1130 aa		4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	ARID4A	P29374	1257 aa	Predicted RBP	4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	NOS2	P35228	1153 aa		4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	IRAK1	P51617	712 aa		4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	PSMA6	P60900	246 aa	Known RBP	4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	SH3PXD2A	Q5TCZ1	1133 aa		4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	TCP11L2	Q8N4U5	519 aa		4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	ZDHHC1	Q8WTX9	485 aa		4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	STK26	Q9P289	416 aa		4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	SEPT3	Q9UH03	358 aa		4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	DHX57	Q6P158	1386 aa	Known RBP	4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	CCDC144A	A2RUR9	1427 aa		4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	NEXMIF	Q5QGS0	1516 aa		4.87	□□□□□ -1.63
SPG11-225	ENST00000561391	EML1	O00423	815 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	LBX1	P52954	281 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	ZC3H6	P61129	1189 aa	Known RBP	4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	TEAD4	Q15561	434 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	ZNF827	Q17R98	1081 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	DMRTC2	Q8IXT2	367 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	CCER1	Q8TC90	406 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	FMNL2	Q96PY5	1086 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	C2orf49	Q9BVC5	232 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	SSBP4	Q9BWG4	385 aa	Predicted RBP	4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	ANO2	Q9NQ90	1003 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	SLC6A14	Q9UN76	642 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	KCNH4	Q9UQ05	1017 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	IVNS1ABP	Q9Y6Y0	642 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	ARHGEF10	O15013	1369 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	EEA1	Q15075	1411 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	ERBIN	Q96RT1	1412 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	LMTK2	Q8IWU2	1503 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	NRXN3	Q9Y4C0	1643 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	CROCC2	H7BZ55	1655 aa		4.86	□□□□□ -1.63
SPG11-225	ENST00000561391	DLL1	O00548	723 aa		4.85	□□□□□ -1.63
SPG11-225	ENST00000561391	SSTR4	P31391	388 aa		4.85	□□□□□ -1.63
SPG11-225	ENST00000561391	IREB2	P48200	963 aa	Known RBP	4.85	□□□□□ -1.63
SPG11-225	ENST00000561391	SERPINB4	P48594	390 aa		4.85	□□□□□ -1.63
SPG11-225	ENST00000561391	CTCF	P49711	727 aa	Predicted RBP	4.85	□□□□□ -1.63
SPG11-225	ENST00000561391	KCNA1	Q09470	495 aa		4.85	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms