RNA–Protein interactions for RNA: ENST00000527823.5

USP48-212, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 554 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-212ENST00000527823 ZNF296Q8WUU4 475 aaPredicted RBP10.66□□□□□ -0.7
USP48-212ENST00000527823 DCPSQ96C86 337 aaKnown RBP10.66□□□□□ -0.7
USP48-212ENST00000527823 KCNQ5Q9NR82 932 aa10.66□□□□□ -0.7
USP48-212ENST00000527823 FCF1Q9Y324 198 aaKnown RBP10.66□□□□□ -0.7
USP48-212ENST00000527823 TRIOBPQ9H2D6 2365 aa10.65□□□□□ -0.7
USP48-212ENST00000527823 CCNYL3P0C7X3 344 aa10.65□□□□□ -0.7
USP48-212ENST00000527823 CTHP32929 405 aa10.65□□□□□ -0.7
USP48-212ENST00000527823 GGCXP38435 758 aa10.65□□□□□ -0.7
USP48-212ENST00000527823 TRIM26Q12899 539 aaPredicted RBP10.65□□□□□ -0.7
USP48-212ENST00000527823 DDX46Q7L014 1031 aaKnown RBP10.65□□□□□ -0.7
USP48-212ENST00000527823 EPS8L1Q8TE68 723 aa10.65□□□□□ -0.7
USP48-212ENST00000527823 PNISRQ8TF01 805 aaKnown RBP10.65□□□□□ -0.7
USP48-212ENST00000527823 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.65□□□□□ -0.7
USP48-212ENST00000527823 MAP10Q9P2G4 905 aa10.65□□□□□ -0.7
USP48-212ENST00000527823 NUDCQ9Y266 331 aa10.65□□□□□ -0.7
USP48-212ENST00000527823 ECM29Q5VYK3 1845 aa10.65□□□□□ -0.71
USP48-212ENST00000527823 OTOFQ9HC10 1997 aa10.65□□□□□ -0.71
USP48-212ENST00000527823 SH3TC1Q8TE82 1336 aa10.64□□□□□ -0.71
USP48-212ENST00000527823 PPP2R1AP30153 589 aa10.64□□□□□ -0.71
USP48-212ENST00000527823 NR6A1Q15406 480 aa10.64□□□□□ -0.71
USP48-212ENST00000527823 PKN2Q16513 984 aaKnown RBP10.64□□□□□ -0.71
USP48-212ENST00000527823 WASHC4Q2M389 1173 aa10.64□□□□□ -0.71
USP48-212ENST00000527823 HABP4Q5JVS0 413 aaKnown RBP10.64□□□□□ -0.71
USP48-212ENST00000527823 MOB2Q70IA6 237 aa10.64□□□□□ -0.71
USP48-212ENST00000527823 CELF1Q92879 486 aaKnown RBP10.64□□□□□ -0.71
USP48-212ENST00000527823 ZNF428Q96B54 188 aa10.64□□□□□ -0.71
USP48-212ENST00000527823 GCC1Q96CN9 775 aa10.64□□□□□ -0.71
USP48-212ENST00000527823 POLLQ9UGP5 575 aa10.64□□□□□ -0.71
USP48-212ENST00000527823 RANBP2P49792 3224 aaKnown RBP10.64□□□□□ -0.71
USP48-212ENST00000527823 TBC1D8O95759 1140 aa10.63□□□□□ -0.71
USP48-212ENST00000527823 GPSM2P81274 684 aa10.63□□□□□ -0.71
USP48-212ENST00000527823 ANGEL2Q5VTE6 544 aaKnown RBP10.63□□□□□ -0.71
USP48-212ENST00000527823 FBXO46Q6PJ61 603 aaPredicted RBP10.63□□□□□ -0.71
USP48-212ENST00000527823 TMC4Q7Z404 712 aa10.63□□□□□ -0.71
USP48-212ENST00000527823 EVA1BQ9NVM1 165 aa10.63□□□□□ -0.71
USP48-212ENST00000527823 HDAC9Q9UKV0 1011 aa10.63□□□□□ -0.71
USP48-212ENST00000527823 MYH3P11055 1940 aa10.62□□□□□ -0.71
USP48-212ENST00000527823 GPR25O00155 361 aa10.62□□□□□ -0.71
USP48-212ENST00000527823 F12P00748 615 aaPredicted RBP10.62□□□□□ -0.71
USP48-212ENST00000527823 PTCRAQ6ISU1 281 aaPredicted RBP10.62□□□□□ -0.71
USP48-212ENST00000527823 PCGF6Q9BYE7 350 aa10.62□□□□□ -0.71
USP48-212ENST00000527823 TRIM34Q9BYJ4 488 aa10.62□□□□□ -0.71
USP48-212ENST00000527823 TRMT112Q9UI30 125 aaKnown RBP10.62□□□□□ -0.71
USP48-212ENST00000527823 NSFL1CQ9UNZ2 370 aaKnown RBP10.62□□□□□ -0.71
USP48-212ENST00000527823 SCAF8Q9UPN6 1271 aaKnown RBP10.62□□□□□ -0.71
USP48-212ENST00000527823 A0A1B0GUL6 1792 aa10.62□□□□□ -0.71
USP48-212ENST00000527823 VIL1P09327 827 aaKnown RBP10.61□□□□□ -0.71
USP48-212ENST00000527823 FXR1P51114 621 aaKnown RBP eCLIP10.61□□□□□ -0.715e-7■■■■□ 25.7
USP48-212ENST00000527823 ZNF280AP59817 542 aaPredicted RBP10.61□□□□□ -0.71
USP48-212ENST00000527823 FKBP1BP68106 108 aa10.61□□□□□ -0.71
USP48-212ENST00000527823 KCNH2Q12809 1159 aa10.61□□□□□ -0.71
USP48-212ENST00000527823 HSP90AB3PQ58FF7 597 aa10.61□□□□□ -0.71
USP48-212ENST00000527823 NOM1Q5C9Z4 860 aaKnown RBP10.61□□□□□ -0.71
USP48-212ENST00000527823 TBC1D16Q8TBP0 767 aa10.61□□□□□ -0.71
USP48-212ENST00000527823 XAGE3Q8WTP9 111 aa10.61□□□□□ -0.71
USP48-212ENST00000527823 PLEKHF1Q96S99 279 aa10.61□□□□□ -0.71
USP48-212ENST00000527823 R3HDMLQ9H3Y0 253 aa10.61□□□□□ -0.71
USP48-212ENST00000527823 PITPNM2Q9BZ72 1349 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 EIF2S2P20042 333 aaKnown RBP10.6□□□□□ -0.71
USP48-212ENST00000527823 TCIRG1Q13488 830 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 SCARF1Q14162 830 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 NFE2L2Q16236 605 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 PLA2G2CQ5R387 149 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 COPS6Q7L5N1 327 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 ANKLE1Q8NAG6 615 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 POM121Q96HA1 1249 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 TSPYL4Q9UJ04 414 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 ZSWIM8A7E2V4 1837 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 SSC5DA1L4H1 1573 aa10.6□□□□□ -0.71
USP48-212ENST00000527823 AIMP1Q12904 312 aaKnown RBP10.59□□□□□ -0.71
USP48-212ENST00000527823 SF3B3Q15393 1217 aaKnown RBP10.59□□□□□ -0.71
USP48-212ENST00000527823 EYA3Q99504 573 aa10.59□□□□□ -0.71
USP48-212ENST00000527823 CFHR5Q9BXR6 569 aa10.59□□□□□ -0.71
USP48-212ENST00000527823 UBE2Q2LH0YL09 131 aa10.58□□□□□ -0.72
USP48-212ENST00000527823 UFL1O94874 794 aa10.58□□□□□ -0.72
USP48-212ENST00000527823 PRAMEF18Q5VWM3 479 aa10.58□□□□□ -0.72
USP48-212ENST00000527823 AGBL3Q8NEM8 1001 aa10.58□□□□□ -0.72
USP48-212ENST00000527823 CLUAP1Q96AJ1 413 aa10.58□□□□□ -0.72
USP48-212ENST00000527823 GMLQ99445 158 aa10.58□□□□□ -0.72
USP48-212ENST00000527823 GDPD2Q9HCC8 539 aa10.58□□□□□ -0.72
USP48-212ENST00000527823 MYOZ2Q9NPC6 264 aa10.58□□□□□ -0.72
USP48-212ENST00000527823 LAMA3Q16787 3333 aa10.57□□□□□ -0.72
USP48-212ENST00000527823 APBB1O00213 710 aa10.57□□□□□ -0.72
USP48-212ENST00000527823 FKTNO75072 461 aa10.57□□□□□ -0.72
USP48-212ENST00000527823 TM4SF4P48230 202 aa10.57□□□□□ -0.72
USP48-212ENST00000527823 FAM89AQ96GI7 184 aa10.57□□□□□ -0.72
USP48-212ENST00000527823 ISCA1Q9BUE6 129 aa10.57□□□□□ -0.72
USP48-212ENST00000527823 UNC93B1Q9H1C4 597 aa10.57□□□□□ -0.72
USP48-212ENST00000527823 PODXL2Q9NZ53 605 aa10.57□□□□□ -0.72
USP48-212ENST00000527823 COL6A3P12111 3177 aa10.57□□□□□ -0.72
USP48-212ENST00000527823 CUL9Q8IWT3 2517 aa10.56□□□□□ -0.72
USP48-212ENST00000527823 SREBF2Q12772 1141 aa10.56□□□□□ -0.72
USP48-212ENST00000527823 KRT24Q2M2I5 525 aa10.56□□□□□ -0.72
USP48-212ENST00000527823 NBPF9Q3BBW0 867 aa10.56□□□□□ -0.72
USP48-212ENST00000527823 CHPF2Q9P2E5 772 aa10.56□□□□□ -0.72
USP48-212ENST00000527823 COG6Q9Y2V7 657 aa10.56□□□□□ -0.72
USP48-212ENST00000527823 COL1A1P02452 1464 aaPredicted RBP10.55□□□□□ -0.72
USP48-212ENST00000527823 ATP5J2-PTCD1G3V325 749 aa10.55□□□□□ -0.72
USP48-212ENST00000527823 OTOP1Q7RTM1 612 aa10.55□□□□□ -0.72
USP48-212ENST00000527823 ZC3H12CQ9C0D7 883 aaKnown RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 90.6 ms