RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 BRDTQ58F21 947 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-204ENST00000427724 MIGA2Q7L4E1 593 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 SLC26A6Q9BXS9 759 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 SNAP23O00161 211 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 ITPK1Q13572 414 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 NEK1Q96PY6 1258 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 USP44Q9H0E7 712 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 GINS2Q9Y248 185 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 PDE8BO95263 885 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 SLC1A4P43007 532 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 UBE2HP62256 183 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 CCDC178Q5BJE1 867 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 CCDC102BQ68D86 513 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 FILIP1Q7Z7B0 1213 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 PLCD3Q8N3E9 789 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 ZNF396Q96N95 335 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-204ENST00000427724 CSRNP1Q96S65 589 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 SH2B1Q9NRF2 756 aaPredicted RBP12.24□□□□□ -0.45
TCOF1-204ENST00000427724 TMEM63CQ9P1W3 806 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 PIK3C2BO00750 1634 aa12.24□□□□□ -0.45
TCOF1-204ENST00000427724 CARMIL3Q8ND23 1372 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 SASH1O94885 1247 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 METAP2P50579 478 aaKnown RBP eCLIP12.23□□□□□ -0.45
TCOF1-204ENST00000427724 AK2P54819 239 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 CT47A1Q5JQC4 288 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-204ENST00000427724 SPHKAPQ2M3C7 1700 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 KLF18A0A0U1RQI7 1052 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 TPM1P09493 284 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 DNM1Q05193 864 aaKnown RBP12.23□□□□□ -0.45
TCOF1-204ENST00000427724 NMIQ13287 307 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-204ENST00000427724 NOLC1Q14978 699 aaKnown RBP eCLIP12.23□□□□□ -0.45
TCOF1-204ENST00000427724 UBA5Q9GZZ9 404 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 CNNM2Q9H8M5 875 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 PKD2L1Q9P0L9 805 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 FER1L4A9Z1Z3 1794 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 BTDP43251 543 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 ZNF445P59923 1031 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 CELF1Q92879 486 aaKnown RBP12.23□□□□□ -0.45
TCOF1-204ENST00000427724 C8orf76Q96K31 380 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 MST1RQ04912 1400 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 BRF1Q92994 677 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 C16orf45Q96MC5 204 aaPredicted RBP12.23□□□□□ -0.45
TCOF1-204ENST00000427724 AS3MTQ9HBK9 375 aa12.23□□□□□ -0.45
TCOF1-204ENST00000427724 LAMC1P11047 1609 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 PTPDC1A2A3K4 754 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 SPDYE3A6NKU9 549 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 PHKA1P46020 1223 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 PABPC4Q13310 644 aaKnown RBP eCLIP12.22□□□□□ -0.453e-6■■■■□ 20.4
TCOF1-204ENST00000427724 PRIMPOLQ96LW4 560 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 PALD1Q9ULE6 856 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 ZBTB43O43298 467 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 IREB2P48200 963 aaKnown RBP12.22□□□□□ -0.45
TCOF1-204ENST00000427724 GNAQP50148 359 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 BEND3Q5T5X7 828 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 TAF3Q5VWG9 929 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 VGLL3A8MV65 326 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 BACH1O14867 736 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 NAPAP54920 295 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 C9orf131Q5VYM1 1079 aa12.22□□□□□ -0.45
TCOF1-204ENST00000427724 ZBED4O75132 1171 aa12.21□□□□□ -0.45
TCOF1-204ENST00000427724 SMC2O95347 1197 aa12.21□□□□□ -0.45
TCOF1-204ENST00000427724 CACNB3P54284 484 aa12.21□□□□□ -0.45
TCOF1-204ENST00000427724 PRR5LQ6MZQ0 368 aa12.21□□□□□ -0.45
TCOF1-204ENST00000427724 EDC3Q96F86 508 aaKnown RBP12.21□□□□□ -0.45
TCOF1-204ENST00000427724 RBM8AQ9Y5S9 174 aaKnown RBP12.21□□□□□ -0.45
TCOF1-204ENST00000427724 GPS2Q13227 327 aa12.21□□□□□ -0.45
TCOF1-204ENST00000427724 FHDC1Q9C0D6 1143 aaPredicted RBP12.21□□□□□ -0.45
TCOF1-204ENST00000427724 ZNF532Q9HCE3 1301 aa12.21□□□□□ -0.46
TCOF1-204ENST00000427724 USP17L12C9JPN9 530 aa12.21□□□□□ -0.46
TCOF1-204ENST00000427724 USP17L21D6R901 530 aa12.21□□□□□ -0.46
TCOF1-204ENST00000427724 GADD45BO75293 160 aaPredicted RBP12.21□□□□□ -0.46
TCOF1-204ENST00000427724 CCDC129Q6ZRS4 1044 aa12.21□□□□□ -0.46
TCOF1-204ENST00000427724 INTS4Q96HW7 963 aaKnown RBP12.21□□□□□ -0.46
TCOF1-204ENST00000427724 SPC25Q9HBM1 224 aa12.21□□□□□ -0.46
TCOF1-204ENST00000427724 ORC3Q9UBD5 711 aaPredicted RBP12.21□□□□□ -0.46
TCOF1-204ENST00000427724 CLIP2Q9UDT6 1046 aa12.21□□□□□ -0.46
TCOF1-204ENST00000427724 NCOA3Q9Y6Q9 1424 aa12.21□□□□□ -0.46
TCOF1-204ENST00000427724 F13A1P00488 732 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 SYT1P21579 422 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 HS1BP3Q53T59 392 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 FAM47CQ5HY64 1035 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 RC3H1Q5TC82 1133 aaKnown RBP12.2□□□□□ -0.46
TCOF1-204ENST00000427724 TMTC2Q8N394 836 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 C17orf53Q8N3J3 647 aaPredicted RBP12.2□□□□□ -0.46
TCOF1-204ENST00000427724 KIFC2Q96AC6 838 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 RAB34Q9BZG1 259 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 SCAND2PQ9GZW5 306 aaPredicted RBP12.2□□□□□ -0.46
TCOF1-204ENST00000427724 ZBTB21Q9ULJ3 1066 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.2□□□□□ -0.46
TCOF1-204ENST00000427724 GPAA1O43292 621 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 BRPF1P55201 1214 aaPredicted RBP12.2□□□□□ -0.46
TCOF1-204ENST00000427724 TMEM266Q2M3C6 531 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 MNS1Q8NEH6 495 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 NAT10Q9H0A0 1025 aaKnown RBP12.2□□□□□ -0.46
TCOF1-204ENST00000427724 CPS1P31327 1500 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 FMNL1O95466 1100 aaPredicted RBP12.2□□□□□ -0.46
TCOF1-204ENST00000427724 ZNF853P0CG23 659 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 DIXDC1Q155Q3 683 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 TTC16Q8NEE8 873 aa12.2□□□□□ -0.46
TCOF1-204ENST00000427724 ECE2O60344 883 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms