RNA–Protein interactions for RNA: ENST00000471309.1

VPS52-216, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 505 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-216ENST00000471309 CHRDL1Q9BU40 450 aa7.29□□□□□ -1.24
VPS52-216ENST00000471309 PAXXQ9BUH6 204 aa7.29□□□□□ -1.24
VPS52-216ENST00000471309 SLC25A39Q9BZJ4 359 aaPredicted RBP7.29□□□□□ -1.24
VPS52-216ENST00000471309 TMEM14CQ9P0S9 112 aa7.29□□□□□ -1.24
VPS52-216ENST00000471309 TRAV5A0A0B4J249 113 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 A0A1W2PRE2 83 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 OR10J4P0C629 311 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 PF4V1P10720 104 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 GP9P14770 177 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 UBE2G2P60604 165 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 TMEM95Q3KNT9 176 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 CST9LP1Q5W188 147 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 FXYD5Q96DB9 178 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 ZNF414Q96IQ9 312 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 NKX6-2Q9C056 277 aaPredicted RBP7.28□□□□□ -1.24
VPS52-216ENST00000471309 OR51M1Q9H341 326 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 ZFAND3Q9H8U3 227 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 RNF24Q9Y225 148 aa7.28□□□□□ -1.24
VPS52-216ENST00000471309 YTHDF2Q9Y5A9 579 aaKnown RBP7.28□□□□□ -1.24
VPS52-216ENST00000471309 PUS1Q9Y606 427 aaKnown RBP eCLIP7.28□□□□□ -1.24
VPS52-216ENST00000471309 A0A0G2JLM5 398 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 DNAJC9-AS1A6NH13 148 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 CLDN34H7C241 214 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 BMPR1BO00238 502 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 CLEC3BP05452 202 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 PYYP10082 97 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 PSMB8P28062 276 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 S100A7P31151 101 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 CEBPGP53567 150 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 SLC35B1P78383 322 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 RELQ04864 619 aaPredicted RBP7.27□□□□□ -1.25
VPS52-216ENST00000471309 FAM74A3Q4VXF1 159 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 FAM209BQ5JX69 171 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 CLEC19AQ6UXS0 136 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 CLRN3Q8NCR9 226 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 C11orf52Q96A22 123 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 NIPSNAP3BQ9BS92 247 aa7.27□□□□□ -1.25
VPS52-216ENST00000471309 ABCA1O95477 2261 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.26□□□□□ -1.25
VPS52-216ENST00000471309 GGTLC3B5MD39 225 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 H3BQ15 152 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 ARL3P36405 182 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 RAB9AP51151 201 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 RIPPLY3P57055 190 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 PNRC1Q12796 327 aaPredicted RBP7.26□□□□□ -1.25
VPS52-216ENST00000471309 FOXE3Q13461 319 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 KIAA0141Q14154 515 aaPredicted RBP7.26□□□□□ -1.25
VPS52-216ENST00000471309 RHEBQ15382 184 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 ZNF343Q6P1L6 599 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 ATRAIDQ6UW56 229 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 TOMM20LQ6UXN7 152 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 TMEM190Q8WZ59 177 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 TCEAL7Q9BRU2 100 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 KLK15Q9H2R5 256 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 PARLQ9H300 379 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 GNB4Q9HAV0 340 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 RABAC1Q9UI14 185 aa7.26□□□□□ -1.25
VPS52-216ENST00000471309 CSMD1Q96PZ7 3565 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 ZNF98A6NK75 572 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 ZNF727A8MUV8 499 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 SCO1O75880 301 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 LY6G6DO95868 133 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 ELANEP08246 267 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 NPPCP23582 126 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 RPL15P61313 204 aaKnown RBP7.25□□□□□ -1.25
VPS52-216ENST00000471309 AWAT1Q58HT5 328 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 LEMD1Q68G75 181 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 TEX38Q6PEX7 206 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 BPIFA4PQ86YQ2 179 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 RNF152Q8N8N0 203 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 MYOZ3Q8TDC0 251 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 RPUSD4Q96CM3 377 aaKnown RBP7.25□□□□□ -1.25
VPS52-216ENST00000471309 TVP23CQ96ET8 276 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 SMIM7Q9BQ49 75 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 NAT8Q9UHE5 227 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 CDC42EP3Q9UKI2 254 aa7.25□□□□□ -1.25
VPS52-216ENST00000471309 SCO2A0A1W2PP80 73 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 PPP5D1E7EU14 171 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 M0R036 132 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 NDUFA4O00483 81 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 MRPS12O15235 138 aaKnown RBP7.24□□□□□ -1.25
VPS52-216ENST00000471309 RNASE1P07998 156 aaKnown RBP7.24□□□□□ -1.25
VPS52-216ENST00000471309 NBEAP1P0C6P0 100 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 IGLC2P0DOY2 106 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 HIST1H1EP10412 219 aaKnown RBP7.24□□□□□ -1.25
VPS52-216ENST00000471309 FOSL1P15407 271 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 SRD5A1P18405 259 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 MYCNOSP40205 109 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 ZNF329Q86UD4 541 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 OR4F17Q8NGA8 305 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 OR4X2Q8NGF9 303 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 DUX5Q96PT3 197 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 SMR3AQ99954 134 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 ESM1Q9NQ30 184 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 SERTAD4Q9NUC0 356 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 SVEP1Q4LDE5 3571 aa7.24□□□□□ -1.25
VPS52-216ENST00000471309 FLNAP21333 2647 aaKnown RBP7.23□□□□□ -1.25
VPS52-216ENST00000471309 TRBV19A0A075B6N1 114 aa7.23□□□□□ -1.25
VPS52-216ENST00000471309 CLPSL1A2RUU4 121 aa7.23□□□□□ -1.25
VPS52-216ENST00000471309 C7orf77A4D0Y5 90 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms