RNA–Protein interactions for RNA: ENST00000542286.5

DDX55-209, Transcript of DEAD-box helicase 55, human

TSL 2

Gene DDX55, Length 2,767 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX55-209	ENST00000542286	IGLV2-23	P01705	113 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	PRRX1	P54821	245 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	TMEM249	Q2WGJ8	235 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	MAJIN	Q3KP22	176 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	OR8I2	Q8N0Y5	310 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	RAX	Q9Y2V3	346 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286		H3BTX0	84 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	CD69	Q07108	199 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	KCNS1	Q96KK3	526 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	GNB1L	Q9BYB4	327 aa		11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	RNASE7	Q9H1E1	156 aa	Known RBP	11.89	□□□□□ -0.51
DDX55-209	ENST00000542286	IGHV2-70D	A0A0C4DH43	119 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286		A0A1W2PRD5	423 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286		A0A1W2PRF3	423 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286		A0A1W2PRM7	423 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	IGHV1-8	P0DP01	117 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	AREG	P15514	252 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	CD24	P25063	80 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	DLX6	P56179	175 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	TCL1A	P56279	114 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	MEF2C	Q06413	473 aa	Predicted RBP	11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	RPEL1	Q2QD12	228 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	OR2D3	Q8NGH3	330 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	ZNF257	Q9Y2Q1	563 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	MRPS16	Q9Y3D3	137 aa	Known RBP	11.88	□□□□□ -0.51
DDX55-209	ENST00000542286		A0A1W2PPI3	338 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	PQLC2	Q6ZP29	291 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	FAM19A2	Q8N3H0	131 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	OSR1	Q8TAX0	266 aa	Predicted RBP	11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	ST6GALNAC6	Q969X2	333 aa		11.88	□□□□□ -0.51
DDX55-209	ENST00000542286	CA1	P00915	261 aa	Predicted RBP	11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	BPIFB3	P59826	476 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	MRGPRG-AS1	Q2M3A8	158 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	C2orf83	Q53S99	150 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	OR4C13	Q8NGP0	309 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	OR1L8	Q8NGR8	309 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	OR5B3	Q8NH48	314 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	TXNDC17	Q9BRA2	123 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	TRBV9	A0A0B4J1U6	114 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	CBY3	A6NI87	242 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286		M0QZ24	198 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	ZNF324	O75467	553 aa	Predicted RBP	11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	TMEM155	Q4W5P6	130 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	CENPW	Q5EE01	88 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	OR10J3	Q5JRS4	329 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	NIT1	Q86X76	327 aa		11.87	□□□□□ -0.51
DDX55-209	ENST00000542286	MFAP2	P55001	183 aa		11.86	□□□□□ -0.51
DDX55-209	ENST00000542286	TMEM177	Q53S58	311 aa		11.86	□□□□□ -0.51
DDX55-209	ENST00000542286	LCN12	Q6JVE5	192 aa		11.86	□□□□□ -0.51
DDX55-209	ENST00000542286	RNF24	Q9Y225	148 aa		11.86	□□□□□ -0.51
DDX55-209	ENST00000542286		A0A1W2PN81	502 aa		11.86	□□□□□ -0.51
DDX55-209	ENST00000542286	CD3E	P07766	207 aa		11.86	□□□□□ -0.51
DDX55-209	ENST00000542286	NTF3	P20783	257 aa		11.86	□□□□□ -0.51
DDX55-209	ENST00000542286	ERH	P84090	104 aa	Known RBP	11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	TNXA	Q16473	311 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	PATE2	Q6UY27	113 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	BORCS7	Q96B45	105 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	EAF1	Q96JC9	268 aa	Predicted RBP	11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	WASHC3	Q9Y3C0	194 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286		V9GYV3	84 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	IGHV2-26	A0A0B4J1V2	119 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	SRI	P30626	198 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	APOBEC3A	P31941	199 aa	Predicted RBP	11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	VAMP3	Q15836	100 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	LDLRAD2	Q5SZI1	272 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	MUC15	Q8N387	334 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	VPS25	Q9BRG1	176 aa		11.85	□□□□□ -0.51
DDX55-209	ENST00000542286	IGKV1D-37	A0A075B6S9	117 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	DLL1	O00548	723 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	CCL21	O00585	134 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	PPBP	P02775	128 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	MGST1	P10620	155 aa	Known RBP	11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	ORM2	P19652	201 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	SLC25A2	Q9BXI2	301 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	CLEC7A	Q9BXN2	247 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	TMEM133	Q9H2Q1	129 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	SPG11	Q96JI7	2443 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	PPOX	P50336	477 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	UBE2L3	P68036	154 aa	Known RBP	11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	TMEM136	Q6ZRR5	245 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	ERAS	Q7Z444	233 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	TMEM167A	Q8TBQ9	72 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	TSKU	Q8WUA8	353 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	SLC25A33	Q9BSK2	321 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	ZNF355P	Q9NSJ1	428 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	SSUH2	Q9Y2M2	353 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	IGLC7	A0M8Q6	106 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	HELT	A6NFD8	242 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	C22orf46	C9J442	243 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	MT-ND6	P03923	174 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	USF1	P22415	310 aa	Predicted RBP	11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	GNG5	P63218	68 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	WDR73	Q6P4I2	378 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	FAM167A-AS1	Q96KT0	104 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	COL25A1	Q9BXS0	654 aa	Predicted RBP	11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	TECR	Q9NZ01	308 aa	Known RBP	11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	RPH3AL	Q9UNE2	315 aa		11.84	□□□□□ -0.51
DDX55-209	ENST00000542286	UTP20	O75691	2785 aa	Known RBP	11.83	□□□□□ -0.51
DDX55-209	ENST00000542286	CX3CL1	P78423	397 aa		11.83	□□□□□ -0.52
DDX55-209	ENST00000542286	BLNK	Q8WV28	456 aa		11.83	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms