RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 TMEM68Q96MH6 324 aa11.82□□□□□ -0.52
NUP54-217ENST00000514987 NOL4LQ96MY1 436 aaPredicted RBP11.82□□□□□ -0.52
NUP54-217ENST00000514987 ATG101Q9BSB4 218 aa11.82□□□□□ -0.52
NUP54-217ENST00000514987 PGPA6NDG6 321 aa11.81□□□□□ -0.52
NUP54-217ENST00000514987 FXYD3Q14802 87 aa11.81□□□□□ -0.52
NUP54-217ENST00000514987 MINOS1Q5TGZ0 78 aa11.81□□□□□ -0.52
NUP54-217ENST00000514987 TMEM136Q6ZRR5 245 aa11.81□□□□□ -0.52
NUP54-217ENST00000514987 WIPF2Q8TF74 440 aaPredicted RBP11.81□□□□□ -0.52
NUP54-217ENST00000514987 MBD6Q96DN6 1003 aa11.81□□□□□ -0.52
NUP54-217ENST00000514987 NAT8BQ9UHF3 227 aa11.81□□□□□ -0.52
NUP54-217ENST00000514987 MINOS1-NBL1R4GNA1 71 aa11.81□□□□□ -0.52
NUP54-217ENST00000514987 TLN1Q9Y490 2541 aaKnown RBP11.81□□□□□ -0.52
NUP54-217ENST00000514987 NAV3Q8IVL0 2385 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 TRAV30A0A087WSZ9 112 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 TOMM40O96008 361 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 RD3LP0DJH9 198 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 APELAP0DMC3 54 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 PSG1P11464 419 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 PRB3Q04118 309 aaPredicted RBP11.8□□□□□ -0.52
NUP54-217ENST00000514987 USF2Q15853 346 aaPredicted RBP11.8□□□□□ -0.52
NUP54-217ENST00000514987 OR10J3Q5JRS4 329 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 TMEM256Q8N2U0 113 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 BLNKQ8WV28 456 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 GPR82Q96P67 336 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 ZNF331Q9NQX6 463 aaPredicted RBP11.8□□□□□ -0.52
NUP54-217ENST00000514987 OTORQ9NRC9 128 aa11.8□□□□□ -0.52
NUP54-217ENST00000514987 LYZP61626 148 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 C5orf64Q2M2E5 130 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 LDLRAD2Q5SZI1 272 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 RUSC1-AS1Q66K80 236 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 BAGE3Q86Y29 109 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 LINC00479Q96M42 142 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 MS4A10Q96PG2 267 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 MRPL27Q9P0M9 148 aaKnown RBP11.79□□□□□ -0.52
NUP54-217ENST00000514987 NPIPB5A8MRT5 1133 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 LY6HO94772 140 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 PAX1P15863 534 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 DDTP30046 118 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 C9orf152Q5JTZ5 239 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 ZNF600Q6ZNG1 722 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 C19orf35Q6ZS72 473 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 NUDT10Q8NFP7 164 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 NUDT11Q96G61 164 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 ZNF48Q96MX3 618 aaPredicted RBP11.79□□□□□ -0.52
NUP54-217ENST00000514987 SLC25A39Q9BZJ4 359 aaPredicted RBP11.79□□□□□ -0.52
NUP54-217ENST00000514987 Q9H3A6 140 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 ZNF492Q9P255 531 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 HILPDAQ9Y5L2 63 aa11.79□□□□□ -0.52
NUP54-217ENST00000514987 ANKHD1Q8IWZ3 2542 aaKnown RBP11.78□□□□□ -0.52
NUP54-217ENST00000514987 IGHV3-21A0A0B4J1V1 117 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 TRAV34A0A0B4J273 112 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 TRBV6-1A0A0K0K1D8 114 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 K7EIM0 57 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 TCL1AP56279 114 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 RAB4BP61018 213 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 CT83Q5H943 113 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 FAM209BQ5JX69 171 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 ZNF562Q6V9R5 426 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 ATP5L2Q7Z4Y8 100 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 TSKUQ8WUA8 353 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 SPTBN2O15020 2390 aa11.78□□□□□ -0.52
NUP54-217ENST00000514987 GRIFINA4D1Z8 144 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 SCGB2A1O75556 95 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 IGKV1-17P01599 117 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 TCRAP04437 139 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 BRS3P32247 399 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 GNG5P63218 68 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 EBI3Q14213 229 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 HES1Q14469 280 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 LYPD1Q8N2G4 141 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 NHLRC2Q8NBF2 726 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 SHANK2-AS3Q9BTD1 123 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 MLST8Q9BVC4 326 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 C7orf69Q9H7B7 122 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 ATMQ13315 3056 aa11.77□□□□□ -0.53
NUP54-217ENST00000514987 BSNQ9UPA5 3926 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 A6NNC1 897 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 SERF1AO75920 110 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 LTAP01374 205 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 APCSP02743 223 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 KLRD1Q13241 179 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 REC114Q7Z4M0 266 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 VMO1Q7Z5L0 202 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 BPIFA4PQ86YQ2 179 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 LURAP1LQ8IV03 231 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 GSX1Q9H4S2 264 aaPredicted RBP11.76□□□□□ -0.53
NUP54-217ENST00000514987 THYN1Q9P016 225 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 NAGKQ9UJ70 344 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 TP53TG3Q9ULZ0 132 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 TBL2Q9Y4P3 447 aaKnown RBP11.76□□□□□ -0.53
NUP54-217ENST00000514987 SOX21Q9Y651 276 aaPredicted RBP11.76□□□□□ -0.53
NUP54-217ENST00000514987 CEP295Q9C0D2 2601 aa11.76□□□□□ -0.53
NUP54-217ENST00000514987 NUPR1O60356 82 aa11.75□□□□□ -0.53
NUP54-217ENST00000514987 SCGB1D1O95968 90 aa11.75□□□□□ -0.53
NUP54-217ENST00000514987 MFAP4P55083 255 aa11.75□□□□□ -0.53
NUP54-217ENST00000514987 MRPL54Q6P161 138 aaKnown RBP11.75□□□□□ -0.53
NUP54-217ENST00000514987 LHFPL4Q7Z7J7 247 aa11.75□□□□□ -0.53
NUP54-217ENST00000514987 TTC9CQ8N5M4 171 aa11.75□□□□□ -0.53
NUP54-217ENST00000514987 Q8N6K4 173 aa11.75□□□□□ -0.53
NUP54-217ENST00000514987 OR4F17Q8NGA8 305 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms