RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 C8GP07360 202 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 SMIM10L2AP0DMW4 78 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 SMIM10L2BP0DMW5 78 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 FAM236CP0DP71 79 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 MIFP14174 115 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 CASP1P29466 404 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 ERP29P30040 261 aaKnown RBP0.66□□□□□ -2.3
VPS50-219ENST00000495039 CAPZBP47756 277 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 YPEL3P61236 119 aaPredicted RBP0.66□□□□□ -2.3
VPS50-219ENST00000495039 ERVS71-1P61550 626 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 RHOBP62745 196 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 RPL19P84098 196 aaKnown RBP0.66□□□□□ -2.3
VPS50-219ENST00000495039 PDE6HQ13956 83 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 POU6F1Q14863 301 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 TAF1AQ15573 450 aaPredicted RBP0.66□□□□□ -2.3
VPS50-219ENST00000495039 HIST3H2BBQ8N257 126 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 PXT1Q8NFP0 134 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 OR10X1Q8NGY0 326 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 AP3S1Q92572 193 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 C2orf50Q96LR7 162 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 TSPAN32Q96QS1 320 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 SELENOSQ9BQE4 189 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 TMEM70Q9BUB7 260 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 C20orf27Q9GZN8 174 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 MIXL1Q9H2W2 232 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 UQCC1Q9NVA1 299 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 C14orf105Q9NVL8 296 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 TVP23BQ9NYZ1 205 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 NESP48681 1621 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 ROCK1Q13464 1354 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 NCOA2Q15596 1464 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 LRRC9Q6ZRR7 1453 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 ABCC5O15440 1437 aa0.65□□□□□ -2.3
VPS50-219ENST00000495039 ZFYVE9O95405 1425 aa0.65□□□□□ -2.3
VPS50-219ENST00000495039 TROQ12816 1431 aaPredicted RBP0.65□□□□□ -2.3
VPS50-219ENST00000495039 SMG6Q86US8 1419 aaKnown RBP0.65□□□□□ -2.3
VPS50-219ENST00000495039 ERBINQ96RT1 1412 aa0.65□□□□□ -2.3
VPS50-219ENST00000495039 ADGRL3Q9HAR2 1447 aa0.65□□□□□ -2.3
VPS50-219ENST00000495039 CNTLNQ9NXG0 1405 aa0.65□□□□□ -2.3
VPS50-219ENST00000495039 KIAA1107Q9UPP5 1409 aa0.65□□□□□ -2.3
VPS50-219ENST00000495039 NCOA6Q14686 2063 aaPredicted RBP0.65□□□□□ -2.31
VPS50-219ENST00000495039 HECW1Q76N89 1606 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 G3V2T6 193 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 C19orf84I3L1E1 186 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 HMGB3O15347 200 aaKnown RBP0.65□□□□□ -2.31
VPS50-219ENST00000495039 OR2T1O43869 369 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 ATG12O94817 140 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 NDUFC2O95298 119 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 IFNA7P01567 189 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 CST2P09228 141 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 BAALC-AS2P0C853 105 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 SMIM17P0DL12 118 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 PRB4P10163 310 aaPredicted RBP0.65□□□□□ -2.31
VPS50-219ENST00000495039 SSR2P43308 183 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 DEFA1P59665 94 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 RPS20P60866 119 aaKnown RBP0.65□□□□□ -2.31
VPS50-219ENST00000495039 VBP1P61758 197 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 EIF5AP63241 154 aaKnown RBP0.65□□□□□ -2.31
VPS50-219ENST00000495039 KRR1Q13601 381 aaKnown RBP0.65□□□□□ -2.31
VPS50-219ENST00000495039 C12orf74Q32Q52 190 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 SCGB2B2Q4G0G5 96 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 AKR1C8PQ5T2L2 129 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 TRIQKQ629K1 86 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 Q6Q795 121 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 GOLT1AQ6ZVE7 132 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 OR11H6Q8NGC7 330 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 OR52L1Q8NGH7 329 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 OR13C6PQ8NH95 151 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 SLC25A40Q8TBP6 338 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 FAM172AQ8WUF8 416 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 GPR146Q96CH1 333 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 LINC00526Q96FQ7 95 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 IMUPQ9GZP8 106 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 CENPHQ9H3R5 247 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 PARVBQ9HBI1 364 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 OSTCQ9NRP0 149 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 ARMC1Q9NVT9 282 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 TAS2R4Q9NYW5 299 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 IDI2-AS1Q9NZ38 188 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 PYCARDQ9ULZ3 195 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 CYSLTR1Q9Y271 337 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 ZFP30Q9Y2G7 519 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 ATP10BO94823 1461 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 PLEKHH2Q8IVE3 1493 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 MAGI1Q96QZ7 1491 aaPredicted RBP0.65□□□□□ -2.31
VPS50-219ENST00000495039 FYCO1Q9BQS8 1478 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 PRXQ9BXM0 1461 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 MRC2Q9UBG0 1479 aa0.65□□□□□ -2.31
VPS50-219ENST00000495039 DAPK1P53355 1430 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 NAIPQ13075 1403 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 FGD6Q6ZV73 1430 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 RRBP1Q9P2E9 1410 aaKnown RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 TRAPPC8Q9Y2L5 1435 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 TOP2AP11388 1531 aaKnown RBP0.64□□□□□ -2.31
VPS50-219ENST00000495039 KIF21BO75037 1637 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 A0A087X0T9 212 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 FAM159BA6NKW6 160 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 BUB1B-PAK6H3BSN5 160 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 CYB5BO43169 146 aa0.64□□□□□ -2.31
VPS50-219ENST00000495039 UBL3O95164 117 aa0.64□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms