RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 H3BQV1 296 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 J3QRK9 145 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 PDE6DO43924 150 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 OR7C1O76099 320 aaPredicted RBP0.68□□□□□ -2.3
VPS50-219ENST00000495039 CNIH1O95406 144 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 TTRP02766 147 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 RBP1P09455 135 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 COX6A1P12074 109 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 HIST1H1TP22492 207 aaPredicted RBP0.68□□□□□ -2.3
VPS50-219ENST00000495039 HOXA6P31267 233 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 KCNJ8Q15842 424 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 IAH1Q2TAA2 248 aaPredicted RBP0.68□□□□□ -2.3
VPS50-219ENST00000495039 MYOM3Q5VTT5 1437 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 CD109Q6YHK3 1445 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 TMED4Q7Z7H5 227 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 OOSP2Q86WS3 158 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 VPS8Q8N3P4 1428 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 LINC00311Q8N616 119 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 OR5A1Q8NGJ0 315 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 CDC26Q8NHZ8 85 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 GNPDA2Q8TDQ7 276 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 CT55Q8WUE5 264 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 MIA2Q96PC5 1412 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 PPP1R2P1Q96PQ5 205 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 SIGMAR1Q99720 223 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 UACAQ9BZF9 1416 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 TLNRD1Q9H1K6 362 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 BOLA2Q9H3K6 86 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 DOCK5Q9H7D0 1870 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 ENY2Q9NPA8 101 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 BAZ1AQ9NRL2 1556 aaPredicted RBP0.68□□□□□ -2.3
VPS50-219ENST00000495039 KLK9Q9UKQ9 250 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 PKIGQ9Y2B9 76 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 PRELID3BQ9Y3B1 194 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 FAM32AQ9Y421 112 aaKnown RBP0.68□□□□□ -2.3
VPS50-219ENST00000495039 TMEM56-RWDD3S4R434 201 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 LAMB4A4D0S4 1761 aa0.68□□□□□ -2.3
VPS50-219ENST00000495039 GAPVD1Q14C86 1478 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 ARHGAP35Q9NRY4 1499 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 NCOA1Q15788 1441 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 ANKRD50Q9ULJ7 1429 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.67□□□□□ -2.3
VPS50-219ENST00000495039 hCG_1818297A0A087WSY0 165 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 A0A087WUJ7 227 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 TRAV1-1A0A0B4J248 108 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 EXOC1LA0A1B0GW35 172 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 C2orf70A6NJV1 201 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 A8MT66 165 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 E5RI56 91 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 FAAHO00519 579 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 OR1I1O60431 355 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 HYPMO75409 117 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 HAND1O96004 215 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 SERPINE1P05121 402 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 PPIBP23284 216 aaKnown RBP0.67□□□□□ -2.3
VPS50-219ENST00000495039 S100A4P26447 101 aaKnown RBP0.67□□□□□ -2.3
VPS50-219ENST00000495039 S100A5P33763 92 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 ZNF93P35789 620 aaPredicted RBP0.67□□□□□ -2.3
VPS50-219ENST00000495039 RPL5P46777 297 aaKnown RBP0.67□□□□□ -2.3
VPS50-219ENST00000495039 RAB4BP61018 213 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 RANP62826 216 aaKnown RBP0.67□□□□□ -2.3
VPS50-219ENST00000495039 RHEBQ15382 184 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 LYRM7Q5U5X0 104 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 HACD4Q5VWC8 232 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 TRAPPC6BQ86SZ2 158 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 STX12Q86Y82 276 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 SIGLECL1Q8N7X8 197 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 GDPD1Q8N9F7 314 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 OR51A2Q8NGJ7 313 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 TERB2Q8NHR7 220 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 H1FXQ92522 213 aaKnown RBP0.67□□□□□ -2.3
VPS50-219ENST00000495039 TOMM6Q96B49 74 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 DGCR14Q96DF8 476 aaKnown RBP0.67□□□□□ -2.3
VPS50-219ENST00000495039 OBSCN-AS1Q96MR7 158 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 PRAP1Q96NZ9 151 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 NIPSNAP1Q9BPW8 284 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 C9orf16Q9BUW7 83 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 TMEM147Q9BVK8 224 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 C11orf68Q9H3H3 251 aaKnown RBP0.67□□□□□ -2.3
VPS50-219ENST00000495039 SLC39A9Q9NUM3 307 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 MRPL27Q9P0M9 148 aaKnown RBP0.67□□□□□ -2.3
VPS50-219ENST00000495039 OPTCQ9UBM4 332 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 ERGIC3Q9Y282 383 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 V9GYQ6 96 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 RTL1A6NKG5 1358 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 FBN2P35556 2912 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 CFTRP13569 1480 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 CCDC18Q5T9S5 1454 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 IFT140Q96RY7 1462 aa0.67□□□□□ -2.3
VPS50-219ENST00000495039 SMARCA2P51531 1590 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 ECM29Q5VYK3 1845 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 CASKIN1Q8WXD9 1431 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 KIAA0586Q9BVV6 1533 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 LOC110117498A0A087WWA1 95 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 TRAV26-2A0A0B4J265 109 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 FAM236DA0A1B0GTK5 79 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 hADV38S2A0JD32 116 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 AIPO00170 330 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 PFDN1O60925 122 aa0.66□□□□□ -2.3
VPS50-219ENST00000495039 TCL1BO95988 128 aa0.66□□□□□ -2.3
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms