RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 OR1L4Q8NGR5 311 aa9.51□□□□□ -0.89
CD44-209ENST00000433892 VN1R17PQ8TDU5 208 aa9.51□□□□□ -0.89
CD44-209ENST00000433892 SNHG12Q9BXW3 62 aa9.51□□□□□ -0.89
CD44-209ENST00000433892 TPRP12270 2363 aaKnown RBP9.51□□□□□ -0.89
CD44-209ENST00000433892 TDGF1P3P51864 188 aa9.51□□□□□ -0.89
CD44-209ENST00000433892 C19orf35Q6ZS72 473 aa9.51□□□□□ -0.89
CD44-209ENST00000433892 LINC00305Q7Z4B0 112 aa9.51□□□□□ -0.89
CD44-209ENST00000433892 ZNF329Q86UD4 541 aa9.51□□□□□ -0.89
CD44-209ENST00000433892 LINC00311Q8N616 119 aa9.51□□□□□ -0.89
CD44-209ENST00000433892 RNASE6Q93091 150 aaKnown RBP9.51□□□□□ -0.89
CD44-209ENST00000433892 RCHY1Q96PM5 261 aa9.51□□□□□ -0.89
CD44-209ENST00000433892 RNF114Q9Y508 228 aa9.51□□□□□ -0.89
CD44-209ENST00000433892 FSTL3O95633 263 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 MOSP00540 346 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 AMY1AP04745 511 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 ORM2P19652 201 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 DLX6P56179 175 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 BPIFB3P59826 476 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 MRGPRG-AS1Q2M3A8 158 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 VMA21Q3ZAQ7 101 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 FAM71F2Q6NXP2 309 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 GFRALQ6UXV0 394 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 SIGLECL1Q8N7X8 197 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 ZNF596Q8TC21 504 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 FXYD5Q96DB9 178 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 ATG101Q9BSB4 218 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 DYNLRB1Q9NP97 96 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 SSUH2Q9Y2M2 353 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 CSMD1Q96PZ7 3565 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 ABCA1O95477 2261 aa9.5□□□□□ -0.89
CD44-209ENST00000433892 BMPR1BO00238 502 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 PEX7O00628 323 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 ZNF253O75346 499 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 GPX1P07203 203 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 IGHV1-8P0DP01 117 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 SRIP30626 198 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 BRS3P32247 399 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 GNG5P63218 68 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 TMEM155Q4W5P6 130 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 PRR27Q6MZM9 219 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 TEX43Q6ZNM6 134 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 C8orf31Q8N9H6 132 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 THAP8Q8NA92 274 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 FBXL7Q9UJT9 491 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 PAM16Q9Y3D7 125 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 POLEQ07864 2286 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 TLN1Q9Y490 2541 aaKnown RBP9.49□□□□□ -0.89
CD44-209ENST00000433892 IGHV3-21A0A0B4J1V1 117 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 C22orf46C9J442 243 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 KRTDAPP60985 99 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 ZNF705AQ6ZN79 300 aaPredicted RBP9.49□□□□□ -0.89
CD44-209ENST00000433892 ASCL5Q7RTU5 278 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 BLNKQ8WV28 456 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 SGK494Q96LW2 274 aa9.49□□□□□ -0.89
CD44-209ENST00000433892 TBL2Q9Y4P3 447 aaKnown RBP9.49□□□□□ -0.89
CD44-209ENST00000433892 IZUMO1RA6ND01 250 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 E7EQL1 145 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 PMCHP20382 165 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 CNTFRP26992 372 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 MC5RP33032 325 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 AMTP48728 403 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 ZNF137PP52743 207 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 MFAP2P55001 183 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 OR10J3Q5JRS4 329 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 C11orf42Q8N5U0 333 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 Q8NA96 180 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 OR1B1Q8NGR6 318 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 TNFRSF19Q9NS68 423 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 JKAMPQ9P055 326 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 A0A1W2PS18 150 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 IGLC7A0M8Q6 106 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 VSTM5A8MXK1 200 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 M0R143 59 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 HLA-DQA1P01909 254 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 APCSP02743 223 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 COMPP49747 757 aaPredicted RBP9.48□□□□□ -0.89
CD44-209ENST00000433892 NUTF2P61970 127 aaKnown RBP9.48□□□□□ -0.89
CD44-209ENST00000433892 SLAQ13239 276 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 COX19Q49B96 90 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 NUDT10Q8NFP7 164 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 NUDT11Q96G61 164 aa9.48□□□□□ -0.89
CD44-209ENST00000433892 ZNF331Q9NQX6 463 aaPredicted RBP9.48□□□□□ -0.89
CD44-209ENST00000433892 PTPRZ1P23471 2315 aaPredicted RBP9.48□□□□□ -0.89
CD44-209ENST00000433892 SHISA9B4DS77 424 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 LGALS7P47929 136 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 TCF15Q12870 199 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 TNXAQ16473 311 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 TMEM183BQ1AE95 376 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 PRR30Q53SZ7 412 aaPredicted RBP9.47□□□□□ -0.89
CD44-209ENST00000433892 PRSS33Q8NF86 280 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 KCNS1Q96KK3 526 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 VAMP8Q9BV40 100 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 TMEM133Q9H2Q1 129 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 NRN1Q9NPD7 142 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 ZNF586Q9NXT0 402 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 KAAG1Q9UBP8 84 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 IGHV1-69-2A0A0G2JMI3 117 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 RAB4AP20338 218 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 TBR1Q16650 682 aa9.47□□□□□ -0.89
CD44-209ENST00000433892 ZNF841Q6ZN19 808 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms