RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 FBXL19-AS1Q494R0 122 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 Q6ZRM9 215 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 GGNQ86UU5 652 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 ZNF114Q8NC26 417 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 OR1B1Q8NGR6 318 aa4.34□□□□□ -1.72
USP28-213ENST00000544967 MGAQ8IWI9 3026 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 TRAV26-1A0A087WT03 109 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 hCG_38984A0A1B0GV85 526 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 J3QR89 54 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 TIMM8AO60220 97 aaPredicted RBP4.33□□□□□ -1.72
USP28-213ENST00000544967 CD33P20138 364 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 ATP5G3P48201 142 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 EFNB3Q15768 340 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 MPV17L2Q567V2 206 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 SLC35E4Q6ICL7 350 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 FA2HQ7L5A8 372 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 C5orf17Q8NAS9 161 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 OR52E5Q8NH55 327 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 SIGMAR1Q99720 223 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 C19orf24Q9BVV8 132 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.33□□□□□ -1.72
USP28-213ENST00000544967 CLCF1Q9UBD9 225 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 PPIAL4EA0A075B759 164 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 PPIAL4CA0A0B4J2A2 164 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 OR2T8A6NH00 312 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 F2Z2F3 143 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 PPIAL4DF5H284 164 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 K7EN84 100 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 RS1O15537 224 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 SYNGR3O43761 229 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 HSBP1O75506 76 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 OR7C1O76099 320 aaPredicted RBP4.33□□□□□ -1.72
USP28-213ENST00000544967 PPIAL4FP0DN26 164 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 COX8AP10176 69 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 PSG2P11465 335 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 PPOXP50336 477 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 AESQ08117 197 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 PSG7Q13046 419 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 RAB31Q13636 194 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 CLEC12BQ2HXU8 276 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 ZNF585BQ52M93 769 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 TMEM251Q8N6I4 163 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 OR9G4Q8NGQ1 327 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 FAM57AQ8TBR7 257 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 CYYR1Q96J86 154 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 POM121L2Q96KW2 1035 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 TMEM167BQ9NRX6 74 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 IGKV1-6A0A0C4DH72 117 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 MBD3L4A6NDZ8 208 aaPredicted RBP4.33□□□□□ -1.72
USP28-213ENST00000544967 MBD3L3A6NE82 208 aaPredicted RBP4.33□□□□□ -1.72
USP28-213ENST00000544967 MBD3L5A6NJ08 208 aaPredicted RBP4.33□□□□□ -1.72
USP28-213ENST00000544967 LRRC30A6NM36 301 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 KALRNO60229 2985 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 CNIH1O95406 144 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 NUDT3O95989 172 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 HAND1O96004 215 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 SRIP30626 198 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 EIF4EBP1Q13541 118 aaPredicted RBP4.33□□□□□ -1.72
USP28-213ENST00000544967 PIGYQ3MUY2 71 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 SPANXN5Q5MJ07 72 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 SPINK14Q6IE38 97 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 EBLN2Q6P2I7 272 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 OR2AE1Q8NHA4 323 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 MBD3L2Q8NHZ7 208 aaPredicted RBP4.33□□□□□ -1.72
USP28-213ENST00000544967 GATAD1Q8WUU5 269 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 RAX2Q96IS3 184 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 RCHY1Q96PM5 261 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 FAM103A1Q9BTL3 118 aaKnown RBP4.33□□□□□ -1.72
USP28-213ENST00000544967 SPANXA1Q9NS26 97 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 WASHC3Q9Y3C0 194 aa4.33□□□□□ -1.72
USP28-213ENST00000544967 CHD3Q12873 2000 aaKnown RBP4.32□□□□□ -1.72
USP28-213ENST00000544967 IGKV3D-15A0A087WSY6 115 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 H3BP45 60 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 IGLV2-14P01704 120 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 HBZP02008 142 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 CT45A6P0DMU7 189 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 CT45A5P0DMU8 189 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 CT45A7P0DMV0 189 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 IAPPP10997 89 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 IGFBP2P18065 325 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 GPR183P32249 361 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 FOXE3Q13461 319 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 CT45A1Q5HYN5 189 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 FAM120AOSQ5T036 256 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 MKXQ8IYA7 352 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 CT45A3Q8NHU0 189 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 PIFOQ8TCI5 191 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 PIGCQ92535 297 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 SPRR3Q9UBC9 169 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 CELSR3Q9NYQ7 3312 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 TRAV8-6A0A0B4J262 113 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 OR4C46A6NHA9 309 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 SYS1-DBNDD2H3BUS1 97 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 M0R2Z0 102 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 CLDN14O95500 239 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 CLDN1O95832 211 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 P04436 131 aa4.32□□□□□ -1.72
USP28-213ENST00000544967 SRSF1Q07955 248 aaKnown RBP eCLIP4.32□□□□□ -1.72
USP28-213ENST00000544967 C16orf47Q6ZP98 133 aaPredicted RBP4.32□□□□□ -1.72
USP28-213ENST00000544967 FAM90A1Q86YD7 464 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms