RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 SGMS2Q8NHU3 365 aa14.85□□□□□ -0.03
SHKBP1-201ENST00000291842 ST6GALNAC6Q969X2 333 aa14.85□□□□□ -0.03
SHKBP1-201ENST00000291842 TMEM186Q96B77 213 aa14.85□□□□□ -0.03
SHKBP1-201ENST00000291842 ZNF503Q96F45 646 aa14.85□□□□□ -0.03
SHKBP1-201ENST00000291842 HIST1H2BLQ99880 126 aa14.85□□□□□ -0.03
SHKBP1-201ENST00000291842 MT-CO2P00403 227 aa14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 IGLV2-23P01705 113 aa14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 USF1P22415 310 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 APOBEC3AP31941 199 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 TMEM155Q4W5P6 130 aa14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 TGIF2LXQ8IUE1 241 aa14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 TRBV23-1A0A0A0MS06 115 aa14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 K7EN84 100 aa14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 CD3EP07766 207 aa14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 IGHV1-8P0DP01 117 aa14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 HLA-DRB5Q30154 266 aa14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 PACRGQ96M98 296 aaPredicted RBP14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 VKORC1Q9BQB6 163 aa14.84□□□□□ -0.03
SHKBP1-201ENST00000291842 IGHV2-70P01814 119 aa14.83□□□□□ -0.03
SHKBP1-201ENST00000291842 ACTL10Q5JWF8 245 aa14.83□□□□□ -0.03
SHKBP1-201ENST00000291842 MORN5Q5VZ52 161 aa14.83□□□□□ -0.03
SHKBP1-201ENST00000291842 PDPNQ86YL7 162 aa14.83□□□□□ -0.03
SHKBP1-201ENST00000291842 C11orf42Q8N5U0 333 aa14.83□□□□□ -0.03
SHKBP1-201ENST00000291842 TMEM167AQ8TBQ9 72 aa14.83□□□□□ -0.03
SHKBP1-201ENST00000291842 WASHC3Q9Y3C0 194 aa14.83□□□□□ -0.03
SHKBP1-201ENST00000291842 ABCA4P78363 2273 aa14.83□□□□□ -0.04
SHKBP1-201ENST00000291842 SLC17A3O00476 420 aa14.83□□□□□ -0.04
SHKBP1-201ENST00000291842 DLL1O00548 723 aa14.83□□□□□ -0.04
SHKBP1-201ENST00000291842 APELAP0DMC3 54 aa14.83□□□□□ -0.04
SHKBP1-201ENST00000291842 CD99P14209 185 aa14.83□□□□□ -0.04
SHKBP1-201ENST00000291842 TMEM183AQ8IXX5 376 aa14.83□□□□□ -0.04
SHKBP1-201ENST00000291842 OR1P1Q8NH06 330 aa14.83□□□□□ -0.04
SHKBP1-201ENST00000291842 SLC35E1Q96K37 410 aa14.83□□□□□ -0.04
SHKBP1-201ENST00000291842 FNDC4Q9H6D8 234 aaPredicted RBP14.83□□□□□ -0.04
SHKBP1-201ENST00000291842 MALRD1Q5VYJ5 2156 aa14.82□□□□□ -0.04
SHKBP1-201ENST00000291842 TRAV5A0A0B4J249 113 aa14.82□□□□□ -0.04
SHKBP1-201ENST00000291842 CRYBB3P26998 211 aa14.82□□□□□ -0.04
SHKBP1-201ENST00000291842 TEX38Q6PEX7 206 aa14.82□□□□□ -0.04
SHKBP1-201ENST00000291842 UHRF2Q96PU4 802 aa14.82□□□□□ -0.04
SHKBP1-201ENST00000291842 TECRQ9NZ01 308 aaKnown RBP14.82□□□□□ -0.04
SHKBP1-201ENST00000291842 KAAG1Q9UBP8 84 aa14.82□□□□□ -0.04
SHKBP1-201ENST00000291842 OR5I1Q13606 314 aa14.82□□□□□ -0.04
SHKBP1-201ENST00000291842 SSX8Q7RTT4 187 aa14.82□□□□□ -0.04
SHKBP1-201ENST00000291842 LINC00311Q8N616 119 aa14.82□□□□□ -0.04
SHKBP1-201ENST00000291842 TYMSP04818 313 aa14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 OR10G8Q8NGN5 311 aa14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 TRAV20A0A0B4J274 112 aa14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 CNTFRP26992 372 aa14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 ZNF90Q03938 601 aa14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 C19orf35Q6ZS72 473 aa14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 VSTM2AQ8TAG5 236 aa14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 ZNF596Q8TC21 504 aa14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 NPIPB3Q92617 1050 aa14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 TMEM133Q9H2Q1 129 aa14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 MRPL36Q9P0J6 103 aaKnown RBP14.81□□□□□ -0.04
SHKBP1-201ENST00000291842 B9A039 149 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 SNRPCP09234 159 aaKnown RBP14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 TRAPPC1Q9Y5R8 145 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 ATRXP46100 2492 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 A0A1W2PN81 502 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 SIAH2O43255 324 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 AMBPP02760 352 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 OR5G3P0C626 314 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 ATP5IP56385 69 aaPredicted RBP14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 LCN2P80188 198 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 FOXL1Q12952 345 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 HCP5Q6MZN7 132 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 C11orf52Q96A22 123 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 TMEM167BQ9NRX6 74 aa14.8□□□□□ -0.04
SHKBP1-201ENST00000291842 ANKHD1Q8IWZ3 2542 aaKnown RBP14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 A0A1W2PPI3 338 aa14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 GGTLC3B5MD39 225 aa14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 AREGP15514 252 aa14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 PPOXP50336 477 aa14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 LGALS4P56470 323 aa14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 SUMO1P63165 101 aaKnown RBP14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 RUSC1-AS1Q66K80 236 aa14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 MUC15Q8N387 334 aa14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 CACNG8Q8WXS5 425 aa14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 EAF1Q96JC9 268 aaPredicted RBP14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 SLC25A33Q9BSK2 321 aa14.79□□□□□ -0.04
SHKBP1-201ENST00000291842 A0A087X0M5 115 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 A0A1B0GX30 115 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 HELTA6NFD8 242 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 RPL15P61313 204 aaKnown RBP14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 CDSNQ15517 529 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 MRGPRG-AS1Q2M3A8 158 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 VMA21Q3ZAQ7 101 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 CENPWQ5EE01 88 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 FAM71F2Q6NXP2 309 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 C8orf31Q8N9H6 132 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 OR4A5Q8NH83 315 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 PFDN5Q99471 154 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 RALYQ9UKM9 306 aaKnown RBP14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 A0A1B0GUS0 222 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 LY6HO94772 140 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 GPX4P36969 197 aaPredicted RBP14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 ZNF137PP52743 207 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 C9orf152Q5JTZ5 239 aa14.78□□□□□ -0.04
SHKBP1-201ENST00000291842 PQLC2Q6ZP29 291 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms