RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 PLA2G5P39877 138 aa12.08□□□□□ -0.48
NUP54-217ENST00000514987 DLX6P56179 175 aa12.08□□□□□ -0.48
NUP54-217ENST00000514987 TAS2R45P59539 299 aa12.08□□□□□ -0.48
NUP54-217ENST00000514987 CD69Q07108 199 aa12.08□□□□□ -0.48
NUP54-217ENST00000514987 PRR30Q53SZ7 412 aaPredicted RBP12.08□□□□□ -0.48
NUP54-217ENST00000514987 LYPD2Q6UXB3 125 aa12.08□□□□□ -0.48
NUP54-217ENST00000514987 RNASEH2CQ8TDP1 164 aaKnown RBP12.08□□□□□ -0.48
NUP54-217ENST00000514987 C11orf52Q96A22 123 aa12.08□□□□□ -0.48
NUP54-217ENST00000514987 TECRQ9NZ01 308 aaKnown RBP12.08□□□□□ -0.48
NUP54-217ENST00000514987 FUT9Q9Y231 359 aa12.08□□□□□ -0.48
NUP54-217ENST00000514987 LY96Q9Y6Y9 160 aa12.08□□□□□ -0.48
NUP54-217ENST00000514987 ZGRF1Q86YA3 2104 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 FCN3O75636 299 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 MYOD1P15172 320 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 LGALS7P47929 136 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 GAMTQ14353 236 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 HLA-DRB5Q30154 266 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 VMA21Q3ZAQ7 101 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 PQLC2Q6ZP29 291 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 TGIF2LXQ8IUE1 241 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 SEPSECSQ9HD40 501 aaKnown RBP12.07□□□□□ -0.48
NUP54-217ENST00000514987 NIT2Q9NQR4 276 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 ZNRD1Q9P1U0 126 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 CTSZQ9UBR2 303 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 MSRB2Q9Y3D2 182 aa12.07□□□□□ -0.48
NUP54-217ENST00000514987 LOC400499M0QZD8 3231 aa12.06□□□□□ -0.48
NUP54-217ENST00000514987 MDFIC2A0A1B0GVS7 189 aa12.06□□□□□ -0.48
NUP54-217ENST00000514987 FAM78BQ5VT40 261 aa12.06□□□□□ -0.48
NUP54-217ENST00000514987 HIST3H2BBQ8N257 126 aa12.06□□□□□ -0.48
NUP54-217ENST00000514987 OR4P4Q8NGL7 312 aa12.06□□□□□ -0.48
NUP54-217ENST00000514987 MRPL32Q9BYC8 188 aaKnown RBP12.06□□□□□ -0.48
NUP54-217ENST00000514987 OR51M1Q9H341 326 aa12.06□□□□□ -0.48
NUP54-217ENST00000514987 RIF1Q5UIP0 2472 aaKnown RBP12.06□□□□□ -0.48
NUP54-217ENST00000514987 C9JCJ5 164 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 IGHV1-8P0DP01 117 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 CHRNB4P30926 498 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 PRRX1P54821 245 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 FOXL1Q12952 345 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 DNLZQ5SXM8 178 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 NECAP1Q8NC96 275 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 OR4X1Q8NH49 305 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 ACY3Q96HD9 319 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 TMEM133Q9H2Q1 129 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 YTHDF2Q9Y5A9 579 aaKnown RBP12.05□□□□□ -0.48
NUP54-217ENST00000514987 TRAV9-1A0A075B6T8 112 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.05□□□□□ -0.48
NUP54-217ENST00000514987 RBP4P02753 201 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 OR5G3P0C626 314 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 FAM87AP0C7U9 286 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 OR10J1P30954 320 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 CA7P43166 264 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 SFRP2Q96HF1 295 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 RALYQ9UKM9 306 aaKnown RBP12.05□□□□□ -0.48
NUP54-217ENST00000514987 ICE1Q9Y2F5 2266 aa12.05□□□□□ -0.48
NUP54-217ENST00000514987 ZFHX2Q9C0A1 2572 aaPredicted RBP12.04□□□□□ -0.48
NUP54-217ENST00000514987 SCO2A0A1W2PP80 73 aa12.04□□□□□ -0.48
NUP54-217ENST00000514987 A0A1W2PPQ1 181 aa12.04□□□□□ -0.48
NUP54-217ENST00000514987 IFITM10A6NMD0 228 aa12.04□□□□□ -0.48
NUP54-217ENST00000514987 FABP1P07148 127 aa12.04□□□□□ -0.48
NUP54-217ENST00000514987 COA6Q5JTJ3 125 aaKnown RBP12.04□□□□□ -0.48
NUP54-217ENST00000514987 SPATA31B1PQ5VZV4 182 aa12.04□□□□□ -0.48
NUP54-217ENST00000514987 MIR17HGQ75NE6 70 aa12.04□□□□□ -0.48
NUP54-217ENST00000514987 TEX45Q8NA69 505 aa12.04□□□□□ -0.48
NUP54-217ENST00000514987 IGLV2-23P01705 113 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 REG1BP48304 166 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 PPOXP50336 477 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 SELENOTP62341 195 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 ETFRF1Q6IPR1 90 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 TMEM183AQ8IXX5 376 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 OR10W1Q8NGF6 305 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 OR1L4Q8NGR5 311 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 PFDN5Q99471 154 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 DERL1Q9BUN8 251 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 ELOVL1Q9BW60 279 aa12.03□□□□□ -0.48
NUP54-217ENST00000514987 SOD3P08294 240 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 C8orf88P0DMB2 117 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 PSG5Q15238 335 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 C4orf17Q53FE4 359 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 ACTL10Q5JWF8 245 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 OR5T1Q8NG75 326 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 OR10G8Q8NGN5 311 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 ZNF430Q9H8G1 570 aaPredicted RBP12.02□□□□□ -0.49
NUP54-217ENST00000514987 GSN-AS1Q9NRJ2 163 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 GVINP1Q7Z2Y8 2422 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 DMXL1Q9Y485 3027 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 DSPP15924 2871 aaKnown RBP12.02□□□□□ -0.49
NUP54-217ENST00000514987 CEP250Q9BV73 2442 aa12.02□□□□□ -0.49
NUP54-217ENST00000514987 IGKV1OR2-108A0A075B7D4 117 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 A0A1W2PRE2 83 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 FOXH1O75593 365 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 ACTL6BO94805 426 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 MMD2Q8IY49 270 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 MUC15Q8N387 334 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 ST6GALNAC3Q8NDV1 305 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 OCC1Q8TAD7 63 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 GPR61Q9BZJ8 451 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 AMMECR1Q9Y4X0 333 aaPredicted RBP12.01□□□□□ -0.49
NUP54-217ENST00000514987 C1QTNF9P0C862 333 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 CTAG1AP78358 180 aa12.01□□□□□ -0.49
NUP54-217ENST00000514987 KLRB1Q12918 225 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms