RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 TRAV21A0A0B4J279 112 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 EREGO14944 169 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 MOSP00540 346 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 IFI6P09912 130 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 SLC22A18ASQ8N1D0 253 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 FAM19A2Q8N3H0 131 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 SMIM20Q8N5G0 67 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 FGF11Q92914 225 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 IL36BQ9NZH7 164 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 RNF115Q9Y4L5 304 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 TNFRSF18Q9Y5U5 241 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 ATP5LO75964 103 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 DCTN5Q9BTE1 182 aa8.46□□□□□ -1.06
COL4A6-208ENST00000538570 HAX1O00165 279 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 SRP19P09132 144 aaKnown RBP8.45□□□□□ -1.06
COL4A6-208ENST00000538570 C18orf15Q96N68 181 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 SELENOKQ9Y6D0 94 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 C9JCJ5 164 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 TMEM238C9JI98 176 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 TBX6O95947 436 aaPredicted RBP8.45□□□□□ -1.06
COL4A6-208ENST00000538570 ICAM4Q14773 271 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 SFTA2Q6UW10 78 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 C1orf122Q6ZSJ8 110 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 CENPVQ7Z7K6 275 aaPredicted RBP8.45□□□□□ -1.06
COL4A6-208ENST00000538570 RCC1LQ96I51 464 aaKnown RBP8.45□□□□□ -1.06
COL4A6-208ENST00000538570 ASCC3Q8N3C0 2202 aaKnown RBP8.45□□□□□ -1.06
COL4A6-208ENST00000538570 IGKV3-20P01619 116 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 ASIPP42127 132 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 ZNF114Q8NC26 417 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 MIA3Q5JRA6 1907 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 BRWD1Q9NSI6 2320 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 TRPM6Q9BX84 2022 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 TNFSF13O75888 250 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 SRXN1Q9BYN0 137 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 NUP214P35658 2090 aaPredicted RBP8.45□□□□□ -1.06
COL4A6-208ENST00000538570 IGHV1-69-2A0A0G2JMI3 117 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 TMEM14DPA8MWL7 114 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 IGHV3-48P01763 117 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 APOHP02749 345 aaPredicted RBP8.45□□□□□ -1.06
COL4A6-208ENST00000538570 ZNF708P17019 499 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 FOXA3P55318 350 aaPredicted RBP8.45□□□□□ -1.06
COL4A6-208ENST00000538570 SCGB3A1Q96QR1 104 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 NRN1Q9NPD7 142 aa8.45□□□□□ -1.06
COL4A6-208ENST00000538570 UBR3Q6ZT12 1888 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 H3BRM9 83 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 EGR1P18146 543 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 ASPHD2Q6ICH7 369 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 WDR82Q6UXN9 313 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 TMEM54Q969K7 222 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 NPCDR1Q9BY65 106 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 PGPEP1Q9NXJ5 209 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 COL24A1Q17RW2 1714 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H2BKO60814 126 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 SERF1AO75920 110 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H2BJP06899 126 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H2BOP23527 126 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H2BBP33778 126 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H2BDP58876 126 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H2BCP62807 126 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST2H2BEQ16778 126 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.44□□□□□ -1.06
COL4A6-208ENST00000538570 TMEM170AQ8WVE7 144 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H2BHQ93079 126 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H2BNQ99877 126 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H2BMQ99879 126 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 TRAV24A0A0B4J272 114 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 NKX2-8O15522 239 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 PDLIM4P50479 330 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 SLAQ13239 276 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 TBR1Q16650 682 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 PRSS53Q2L4Q9 553 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 NAA38Q9BRA0 125 aaKnown RBP8.44□□□□□ -1.06
COL4A6-208ENST00000538570 MBNL3Q9NUK0 354 aaKnown RBP8.44□□□□□ -1.06
COL4A6-208ENST00000538570 SEMA5BQ9P283 1151 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 SYNGR3O43761 229 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 OR5P3Q8WZ94 311 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 ZNFX1Q9P2E3 1918 aaKnown RBP8.44□□□□□ -1.06
COL4A6-208ENST00000538570 SEC11AP67812 179 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 TEX45Q8NA69 505 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 OR4X2Q8NGF9 303 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 TMEM106BQ9NUM4 274 aa8.44□□□□□ -1.06
COL4A6-208ENST00000538570 A0A0G2JLM5 398 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 SRSF3P84103 164 aaKnown RBP8.43□□□□□ -1.06
COL4A6-208ENST00000538570 TMEM144Q7Z5S9 345 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 FMC1Q96HJ9 113 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H2BLQ99880 126 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 WFDC6Q9BQY6 131 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 NPIPB4C9JG80 1138 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 M0R381 172 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 GREM1O60565 184 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 C1orf194Q5T5A4 169 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 ST20Q9HBF5 79 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 STPG1Q5TH74 334 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 TMEM74BQ9NUR3 256 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 EPDR1Q9UM22 224 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 PEX7O00628 323 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 HOXA3O43365 443 aaPredicted RBP8.43□□□□□ -1.06
COL4A6-208ENST00000538570 PF4P02776 101 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 NBEAP1P0C6P0 100 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 HIST3H2BBQ8N257 126 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms