RNA–Protein interactions for RNA: YOR171C

LCB4, Transcript of Sphingoid long-chain base kinase, yeast

Gene LCB4, Length 1,875 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
LCB4	YOR171C	RPC37	P36121	282 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	JEM1	P40358	645 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	VHR1	P40522	640 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	EXG2	P52911	562 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	PTA1	Q01329	785 aa	Predicted RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	LEE1	Q02799	301 aa	Known RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	HFD1	Q04458	532 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	DBP9	Q06218	594 aa	Known RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	TRE2	Q08693	809 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	DCS2	Q12123	353 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	YRM1	Q12340	786 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	LAS17	Q12446	633 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	YMR084W	A2P2R3	262 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	FUR1	P18562	216 aa	Known RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	DAL3	P32459	195 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	DHR2	P36009	735 aa	Predicted RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	KTR4	P38131	464 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	MIP6	P38760	659 aa	Known RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	OAF1	P39720	1047 aa	Predicted RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	PZF1	P39933	429 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	YER034W	P40022	185 aa	Known RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	GPP2	P40106	250 aa	Known RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	GZF3	P42944	551 aa	Known RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	MTR3	P48240	250 aa	Predicted RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	VPS4	P52917	437 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	ATG38	Q05789	226 aa	Known RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	SMD2	Q06217	110 aa	Known RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	OPY2	Q06810	360 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	YTM1	Q12024	460 aa	Predicted RBP	3.5	□□□□□ -1.85
LCB4	YOR171C	SCM3	Q12334	223 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	SWM1	Q12379	170 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	SMC6	Q12749	1114 aa		3.5	□□□□□ -1.85
LCB4	YOR171C	SES1	P07284	462 aa	Known RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	RPB4	P20433	221 aa	Predicted RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	REC107	P21651	314 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	TRX1	P22217	103 aa	Known RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	RAD16	P31244	790 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	SMY1	P32364	656 aa	Known RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	TFB1	P32776	642 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	RIB7	P33312	244 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	HSM3	P38348	480 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	SIC1	P38634	284 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	TIF4631	P39935	952 aa	Known RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	ARB1	P40024	610 aa	Known RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	PCL7	P40186	285 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	3.49	□□□□□ -1.85	not detected
LCB4	YOR171C	RSC8	P43609	557 aa	Known RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	SET2	P46995	733 aa	Known RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	IML2	P47031	731 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	YJL055W	P47044	245 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	YGR153W	P48238	217 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	MRPS35	P53292	345 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	MEP3	P53390	489 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	PAP2	P53632	584 aa	Known RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	BRE5	P53741	515 aa	Known RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	REX2	P54964	269 aa	Known RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	ECM9	Q02202	377 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	YLR287C	Q05881	355 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	MLC2	Q06580	163 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	PEX19	Q07418	342 aa		3.49	□□□□□ -1.85
LCB4	YOR171C	SMF3	Q12078	473 aa	Predicted RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	RRG1	Q12167	365 aa	Predicted RBP	3.49	□□□□□ -1.85
LCB4	YOR171C	YLR415C	O13578	112 aa		3.48	□□□□□ -1.85
LCB4	YOR171C	MRP7	P12687	371 aa		3.48	□□□□□ -1.85
LCB4	YOR171C	VMA2	P16140	517 aa	Known RBP	3.48	□□□□□ -1.85
LCB4	YOR171C	STE11	P23561	717 aa		3.48	□□□□□ -1.85
LCB4	YOR171C	ORC2	P32833	620 aa		3.48	□□□□□ -1.85
LCB4	YOR171C	SRP72	P38688	640 aa	Known RBP	3.48	□□□□□ -1.85
LCB4	YOR171C	TDA3	P38758	523 aa		3.48	□□□□□ -1.85
LCB4	YOR171C	CCT5	P40413	562 aa	Known RBP	3.48	□□□□□ -1.85
LCB4	YOR171C	HIS6	P40545	261 aa		3.48	□□□□□ -1.85
LCB4	YOR171C	YJR039W	P47107	1121 aa		3.48	□□□□□ -1.85
LCB4	YOR171C	SPO1	P53541	631 aa		3.48	□□□□□ -1.85
LCB4	YOR171C	YDL073W	Q07454	984 aa		3.48	□□□□□ -1.85
LCB4	YOR171C	ETT1	Q08421	412 aa	Known RBP	3.48	□□□□□ -1.85
LCB4	YOR171C	BMS1	Q08965	1183 aa	Known RBP	3.48	□□□□□ -1.85
LCB4	YOR171C	REX3	Q12090	404 aa		3.48	□□□□□ -1.85
LCB4	YOR171C	HSH49	Q99181	213 aa	Predicted RBP	3.48	□□□□□ -1.85
LCB4	YOR171C	RPS21A	P0C0V8	87 aa	Known RBP	3.47	□□□□□ -1.85
LCB4	YOR171C	BEM3	P32873	1128 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	CNS1	P33313	385 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	UBS1	P38290	277 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	TIF5	P38431	405 aa	Known RBP	3.47	□□□□□ -1.85
LCB4	YOR171C	SSZ1	P38788	538 aa	Known RBP	3.47	□□□□□ -1.85
LCB4	YOR171C	RIX1	P38883	763 aa	Predicted RBP	3.47	□□□□□ -1.85
LCB4	YOR171C	HXT6	P39003	570 aa	Known RBP	3.47	□□□□□ -1.85
LCB4	YOR171C	HXT7	P39004	570 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	FMP10	P40098	244 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	RIC1	P40395	1056 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	LAM5	P43560	674 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	AGX1	P43567	385 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	MNN11	P46985	422 aa	Known RBP	3.47	□□□□□ -1.85
LCB4	YOR171C	VID30	P53076	958 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	HST1	P53685	503 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	ERG5	P54781	538 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	SEC5	P89102	971 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	CLU1	Q03690	1277 aa	Known RBP	3.47	□□□□□ -1.85
LCB4	YOR171C	TAF11	Q04226	346 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	YMR018W	Q04364	514 aa		3.47	□□□□□ -1.85
LCB4	YOR171C	TDA9	Q04545	1251 aa		3.47	□□□□□ -1.85

Retrieved 100 of 5,963 RNA–protein pairs in 10.8 ms