RNA–Protein interactions for RNA: YKL197C

PEX1, Transcript of AAA-peroxin, yeast

Gene PEX1, Length 3,132 nt, Biotype protein coding, Subcellular localisation Peroxisome .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PEX1	YKL197C	RPL34A	P87262	121 aa	Predicted RBP	3.58	□□□□□ -1.84
PEX1	YKL197C	PRP42	Q03776	544 aa	Known RBP	3.58	□□□□□ -1.84
PEX1	YKL197C	RRP17	Q04031	235 aa	Predicted RBP	3.58	□□□□□ -1.84
PEX1	YKL197C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	3.58	□□□□□ -1.84	not detected
PEX1	YKL197C	YDR056C	Q12025	205 aa		3.58	□□□□□ -1.84
PEX1	YKL197C	PDE2	P06776	526 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	MRPL33	P20084	86 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	KRE2	P27809	442 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	RPC19	P28000	142 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	DOA4	P32571	926 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	SQT1	P35184	431 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	YKL069W	P36088	180 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	YHR054C	P38780	354 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	RTC3	P38804	111 aa	Predicted RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	UTP9	P38882	575 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	NEO1	P40527	1151 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	EPL1	P43572	832 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	POL32	P47110	350 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	TOM22	P49334	152 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	ALT1	P52893	592 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	RPN14	P53196	417 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	YGR250C	P53316	781 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	ABZ2	Q03266	374 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	SSL1	Q04673	461 aa	Predicted RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	ADY3	Q07732	790 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	RAD9	P14737	1309 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	TRP3	P00937	484 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	YML002W	P0CF17	737 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	HSF1	P10961	833 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	RAP1	P11938	827 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	VMA2	P16140	517 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	MRPL8	P22353	238 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	RPC53	P25441	422 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	SSH4	P32343	579 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	RPN2	P32565	945 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	ERT1	P38140	529 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	DSS1	P39112	969 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	NUP60	P39705	539 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	YIL092W	P40497	633 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	PCI8	P40512	444 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	GPD2	P41911	440 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	YGL117W	P53133	265 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	OKP1	P53298	406 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	FYV6	P53913	173 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	ASI1	P54074	624 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	UBX4	P54730	416 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	SHE9	Q04172	456 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	YMR114C	Q04471	368 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	GSF2	Q04697	403 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	BRE4	Q07660	1125 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	YDR461C-A	Q2V2P7	80 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	GCD1	P09032	578 aa	Predicted RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	PRP16	P15938	1071 aa	Predicted RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	DBP3	P20447	523 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	PWP1	P21304	576 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	CDC10	P25342	322 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	UBP11	P36026	717 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	IFA38	P38286	347 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	PSY2	P40164	858 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	ULP2	P40537	1034 aa	Predicted RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	ZIM17	P42844	174 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	TEL2	P53038	688 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	YNR040W	P53736	256 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	GOR1	P53839	350 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	ALD6	P54115	500 aa	Known RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	RTT103	Q05543	409 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	OPY2	Q06810	360 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	NDE2	Q07500	545 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	SMF3	Q12078	473 aa	Predicted RBP	3.57	□□□□□ -1.84
PEX1	YKL197C	SKM1	Q12469	655 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	YBL113C	Q7M4S9	792 aa		3.57	□□□□□ -1.84
PEX1	YKL197C	HXK1	P04806	485 aa	Known RBP	3.56	□□□□□ -1.84
PEX1	YKL197C	ARG80	P07249	177 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	MET3	P08536	511 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	SRS2	P12954	1174 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	MSD1	P15179	658 aa	Known RBP	3.56	□□□□□ -1.84
PEX1	YKL197C	SUI2	P20459	304 aa	Known RBP	3.56	□□□□□ -1.84
PEX1	YKL197C	CBP3	P21560	335 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	TRX1	P22217	103 aa	Known RBP	3.56	□□□□□ -1.84
PEX1	YKL197C	VMA3	P25515	160 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	MSH1	P25846	959 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	YJU2	P28320	278 aa	Predicted RBP	3.56	□□□□□ -1.84
PEX1	YKL197C	ATO2	P32907	282 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	RPC34	P32910	317 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	SCD5	P34758	872 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	MOT2	P34909	587 aa	Known RBP	3.56	□□□□□ -1.84
PEX1	YKL197C	MRPL16	P38064	232 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	RFC5	P38251	354 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	CRP1	P38845	465 aa	Known RBP	3.56	□□□□□ -1.84
PEX1	YKL197C	YTA12	P40341	825 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	VID28	P40547	921 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	MKT1	P40850	830 aa	Known RBP	3.56	□□□□□ -1.84
PEX1	YKL197C	QRI1	P43123	477 aa	Known RBP	3.56	□□□□□ -1.84
PEX1	YKL197C	ABM1	P47146	123 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	LYS5	P50113	272 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	YML6	P51998	286 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	PIB2	P53191	635 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	YML131W	Q03102	365 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	DYN3	Q04949	312 aa		3.56	□□□□□ -1.84
PEX1	YKL197C	PNP1	Q05788	311 aa		3.56	□□□□□ -1.84

Retrieved 100 of 5,963 RNA–protein pairs in 10.2 ms