RNA–Protein interactions for RNA: YKL012W

PRP40, Transcript of U1 snRNP protein involved in splicing, yeastyeast

Gene PRP40, Length 1,752 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
PRP40YKL012W KAR4P25583 335 aa6.45□□□□□ -1.38
PRP40YKL012W PLB1P39105 664 aa6.45□□□□□ -1.38
PRP40YKL012W MEP3P53390 489 aa6.45□□□□□ -1.38
PRP40YKL012W YLR224WQ05947 369 aa6.45□□□□□ -1.38
PRP40YKL012W YDR056CQ12025 205 aa6.45□□□□□ -1.38
PRP40YKL012W HOS1Q12214 470 aa6.45□□□□□ -1.38
PRP40YKL012W MIS1P09440 975 aaKnown RBP6.44□□□□□ -1.38
PRP40YKL012W HMG2P12684 1045 aa6.44□□□□□ -1.38
PRP40YKL012W SPO1P53541 631 aa6.44□□□□□ -1.38
PRP40YKL012W IWR1Q07532 353 aaPredicted RBP6.44□□□□□ -1.38
PRP40YKL012W DFG16Q99234 619 aa6.44□□□□□ -1.38
PRP40YKL012W URA3P03962 267 aa6.44□□□□□ -1.38
PRP40YKL012W NUC1P08466 329 aa6.44□□□□□ -1.38
PRP40YKL012W POL3P15436 1097 aa6.44□□□□□ -1.38
PRP40YKL012W CDS1P38221 457 aa6.44□□□□□ -1.38
PRP40YKL012W GET2P40056 285 aa6.44□□□□□ -1.38
PRP40YKL012W KAP123P40069 1113 aaKnown RBP6.44□□□□□ -1.38
PRP40YKL012W TMA108P40462 946 aa6.44□□□□□ -1.38
PRP40YKL012W BNA1P47096 177 aa6.44□□□□□ -1.38
PRP40YKL012W CTK1Q03957 528 aaKnown RBP6.44□□□□□ -1.38
PRP40YKL012W DIA2Q08496 732 aaPredicted RBP6.44□□□□□ -1.38
PRP40YKL012W RTP1Q12751 981 aa6.44□□□□□ -1.38
PRP40YKL012W RPS9BP05755 195 aaKnown RBP6.43□□□□□ -1.38
PRP40YKL012W ARG1P22768 420 aa6.43□□□□□ -1.38
PRP40YKL012W MFT1P33441 392 aaKnown RBP6.43□□□□□ -1.38
PRP40YKL012W MPE1P35728 441 aaKnown RBP6.43□□□□□ -1.38
PRP40YKL012W POL12P38121 705 aaPredicted RBP6.43□□□□□ -1.38
PRP40YKL012W TAH11P47112 604 aa6.43□□□□□ -1.38
PRP40YKL012W MDR1P53258 950 aa6.43□□□□□ -1.38
PRP40YKL012W MDM1Q01846 1127 aa6.43□□□□□ -1.38
PRP40YKL012W AAD4Q07747 329 aa6.43□□□□□ -1.38
PRP40YKL012W UBC1P21734 215 aaKnown RBP6.42□□□□□ -1.38
PRP40YKL012W PEX1P24004 1043 aa6.42□□□□□ -1.38
PRP40YKL012W CLB4P24871 460 aa6.42□□□□□ -1.38
PRP40YKL012W CRD1Q07560 283 aa6.42□□□□□ -1.38
PRP40YKL012W IMP2'P32351 346 aa6.41□□□□□ -1.38
PRP40YKL012W LIP5P32875 414 aa6.41□□□□□ -1.38
PRP40YKL012W CRG1P38892 291 aaRIP-Chip data6.41□□□□□ -1.38not detected
PRP40YKL012W LYS9P38999 446 aa6.41□□□□□ -1.38
PRP40YKL012W YDL183CP48569 320 aa6.41□□□□□ -1.38
PRP40YKL012W ESF2P53743 316 aaKnown RBP6.41□□□□□ -1.38
PRP40YKL012W ERG5P54781 538 aa6.41□□□□□ -1.38
PRP40YKL012W TUF1P02992 437 aaKnown RBP6.41□□□□□ -1.38
PRP40YKL012W CAD1P24813 409 aaKnown RBP6.41□□□□□ -1.38
PRP40YKL012W FRD1P32614 470 aaKnown RBP6.41□□□□□ -1.38
PRP40YKL012W SLC1P33333 303 aa6.41□□□□□ -1.38
PRP40YKL012W SEG2P34250 1132 aa6.41□□□□□ -1.38
PRP40YKL012W PSF2P40359 213 aa6.41□□□□□ -1.38
PRP40YKL012W FAF1P40546 346 aaPredicted RBP6.41□□□□□ -1.38
PRP40YKL012W SPT20P50875 604 aa6.41□□□□□ -1.38
PRP40YKL012W MTL1P53214 551 aa6.41□□□□□ -1.38
PRP40YKL012W TFC6Q06339 672 aa6.41□□□□□ -1.38
PRP40YKL012W THI22Q06490 572 aa6.41□□□□□ -1.38
PRP40YKL012W YCG1Q06680 1035 aa6.41□□□□□ -1.38
PRP40YKL012W RPS13P05756 151 aaKnown RBP6.4□□□□□ -1.38
PRP40YKL012W SNF1P06782 633 aaKnown RBP6.4□□□□□ -1.38
PRP40YKL012W SEC15P22224 910 aa6.4□□□□□ -1.38
PRP40YKL012W YBR138CP38277 524 aa6.4□□□□□ -1.38
PRP40YKL012W FTR1P40088 404 aa6.4□□□□□ -1.38
PRP40YKL012W FKH2P41813 862 aa6.4□□□□□ -1.38
PRP40YKL012W BAP3P41815 604 aa6.4□□□□□ -1.38
PRP40YKL012W GSM1P42950 618 aa6.4□□□□□ -1.38
PRP40YKL012W YRB30P53107 440 aaPredicted RBP6.4□□□□□ -1.38
PRP40YKL012W ACS1Q01574 713 aa6.4□□□□□ -1.38
PRP40YKL012W LAT1P12695 482 aaKnown RBP6.39□□□□□ -1.39
PRP40YKL012W NPR3P38742 1146 aa6.39□□□□□ -1.39
PRP40YKL012W VID22Q05934 901 aa6.39□□□□□ -1.39
PRP40YKL012W AIM41Q12032 185 aa6.39□□□□□ -1.39
PRP40YKL012W ENB1Q08299 606 aa6.39□□□□□ -1.39
PRP40YKL012W LEU2P04173 364 aaPredicted RBP6.38□□□□□ -1.39
PRP40YKL012W ADE3P07245 946 aaKnown RBP6.38□□□□□ -1.39
PRP40YKL012W SWI4P25302 1093 aaKnown RBP6.38□□□□□ -1.39
PRP40YKL012W RPT3P33298 428 aaKnown RBP6.38□□□□□ -1.39
PRP40YKL012W IFA38P38286 347 aa6.38□□□□□ -1.39
PRP40YKL012W SFB3P38810 929 aa6.38□□□□□ -1.39
PRP40YKL012W LSB3P43603 459 aaKnown RBP6.38□□□□□ -1.39
PRP40YKL012W ECL1P48235 211 aa6.38□□□□□ -1.39
PRP40YKL012W CTF18P49956 741 aa6.38□□□□□ -1.39
PRP40YKL012W AMA1P50082 593 aa6.38□□□□□ -1.39
PRP40YKL012W RGA2Q06407 1009 aa6.38□□□□□ -1.39
PRP40YKL012W CSR1Q06705 408 aaKnown RBP6.38□□□□□ -1.39
PRP40YKL012W TRM8Q12009 286 aa6.38□□□□□ -1.39
PRP40YKL012W MED1Q12321 566 aa6.38□□□□□ -1.39
PRP40YKL012W INH1P01097 85 aa6.37□□□□□ -1.39
PRP40YKL012W RIT1P23796 513 aa6.37□□□□□ -1.39
PRP40YKL012W MRPL36P36531 177 aa6.37□□□□□ -1.39
PRP40YKL012W COS111P38308 924 aa6.37□□□□□ -1.39
PRP40YKL012W NUP60P39705 539 aa6.37□□□□□ -1.39
PRP40YKL012W NDE1P40215 560 aa6.37□□□□□ -1.39
PRP40YKL012W YIR042CP40586 236 aa6.37□□□□□ -1.39
PRP40YKL012W POL31P46957 487 aa6.37□□□□□ -1.39
PRP40YKL012W IMA1P53051 589 aa6.37□□□□□ -1.39
PRP40YKL012W FDC1Q03034 503 aa6.37□□□□□ -1.39
PRP40YKL012W ARA2Q04212 335 aa6.37□□□□□ -1.39
PRP40YKL012W YFT2Q06676 274 aa6.37□□□□□ -1.39
PRP40YKL012W LAS17Q12446 633 aa6.37□□□□□ -1.39
PRP40YKL012W SOD2P00447 233 aa6.36□□□□□ -1.39
PRP40YKL012W PCK1P10963 549 aa6.36□□□□□ -1.39
PRP40YKL012W TUP1P16649 713 aa6.36□□□□□ -1.39
PRP40YKL012W FMO1P38866 432 aa6.36□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 51.8 ms