RNA–Protein interactions for RNA: YER139C

RTR1, Transcript of CTD phosphatase, yeastyeast

Gene RTR1, Length 681 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RTR1YER139C THI6P41835 540 aa3.55□□□□□ -1.84
RTR1YER139C YNL018CP53976 612 aa3.55□□□□□ -1.84
RTR1YER139C GPD1Q00055 391 aaKnown RBP3.55□□□□□ -1.84
RTR1YER139C NUP53Q03790 475 aa3.55□□□□□ -1.84
RTR1YER139C VBA4Q04602 768 aaKnown RBP3.55□□□□□ -1.84
RTR1YER139C CDC53Q12018 815 aaKnown RBP3.55□□□□□ -1.84
RTR1YER139C CRC1Q12289 327 aa3.55□□□□□ -1.84
RTR1YER139C URE2P23202 354 aaKnown RBP3.54□□□□□ -1.84
RTR1YER139C IMG2P25642 146 aaPredicted RBP3.54□□□□□ -1.84
RTR1YER139C IDP3P53982 420 aaKnown RBP3.54□□□□□ -1.84
RTR1YER139C HMG1P12683 1054 aa3.53□□□□□ -1.84
RTR1YER139C TMN3P40071 706 aa3.53□□□□□ -1.84
RTR1YER139C AIM14P53109 570 aa3.53□□□□□ -1.84
RTR1YER139C COQ6P53318 479 aa3.53□□□□□ -1.84
RTR1YER139C BSP1Q06604 576 aa3.53□□□□□ -1.84
RTR1YER139C HER1Q12276 1246 aa3.53□□□□□ -1.84
RTR1YER139C MRPL7P36519 292 aa3.52□□□□□ -1.85
RTR1YER139C MFM1Q02783 413 aa3.52□□□□□ -1.85
RTR1YER139C ATG33Q06485 197 aa3.52□□□□□ -1.85
RTR1YER139C YLR111WQ12528 110 aa3.52□□□□□ -1.85
RTR1YER139C YMR084WA2P2R3 262 aa3.51□□□□□ -1.85
RTR1YER139C YPR089WO13585 888 aa3.51□□□□□ -1.85
RTR1YER139C GSY2P27472 705 aa3.51□□□□□ -1.85
RTR1YER139C PPE1P38796 400 aa3.51□□□□□ -1.85
RTR1YER139C YAT2P40017 923 aa3.51□□□□□ -1.85
RTR1YER139C CHZ1P40019 153 aaPredicted RBP3.51□□□□□ -1.85
RTR1YER139C NSE3Q05541 303 aa3.51□□□□□ -1.85
RTR1YER139C YDL073WQ07454 984 aa3.51□□□□□ -1.85
RTR1YER139C YMR085WP0CF18 432 aa3.5□□□□□ -1.85
RTR1YER139C IME1P21190 360 aa3.5□□□□□ -1.85
RTR1YER139C BEM4P39011 633 aa3.5□□□□□ -1.85
RTR1YER139C EXO1P39875 702 aa3.5□□□□□ -1.85
RTR1YER139C OPT1P40897 799 aa3.5□□□□□ -1.85
RTR1YER139C YFL015CP43578 164 aa3.5□□□□□ -1.85
RTR1YER139C EFR3Q03653 782 aaKnown RBP3.5□□□□□ -1.85
RTR1YER139C WHI2P12611 486 aa3.49□□□□□ -1.85
RTR1YER139C STI1P15705 589 aaKnown RBP RIP-Chip data3.49□□□□□ -1.85not detected
RTR1YER139C PRP22P24384 1145 aaKnown RBP3.49□□□□□ -1.85
RTR1YER139C CNE1P27825 502 aa3.49□□□□□ -1.85
RTR1YER139C YKU70P32807 602 aa3.49□□□□□ -1.85
RTR1YER139C TIM23P32897 222 aa3.49□□□□□ -1.85
RTR1YER139C BUD17P53727 317 aa3.49□□□□□ -1.85
RTR1YER139C TIM50Q02776 476 aa3.49□□□□□ -1.85
RTR1YER139C YPL216WQ08964 1102 aa3.49□□□□□ -1.85
RTR1YER139C PCL2P25693 308 aa3.48□□□□□ -1.85
RTR1YER139C YMR124WP39523 943 aaKnown RBP3.48□□□□□ -1.85
RTR1YER139C OAF1P39720 1047 aaPredicted RBP3.48□□□□□ -1.85
RTR1YER139C RDL1Q12305 139 aaKnown RBP3.48□□□□□ -1.85
RTR1YER139C YER190C-BP0CX94 160 aa3.47□□□□□ -1.85
RTR1YER139C YEL077W-AP0CX95 160 aa3.47□□□□□ -1.85
RTR1YER139C YGR296C-BP0CX96 160 aa3.47□□□□□ -1.85
RTR1YER139C YPL283W-BP0CX97 160 aa3.47□□□□□ -1.85
RTR1YER139C YPR204C-AP0CX98 160 aa3.47□□□□□ -1.85
RTR1YER139C YKR075CP36155 307 aa3.47□□□□□ -1.85
RTR1YER139C PCM1P38628 557 aaKnown RBP3.47□□□□□ -1.85
RTR1YER139C YIL024CP40543 189 aa3.47□□□□□ -1.85
RTR1YER139C BUD8P41698 603 aa3.47□□□□□ -1.85
RTR1YER139C SPO1P53541 631 aa3.47□□□□□ -1.85
RTR1YER139C RPS15Q01855 142 aaKnown RBP3.47□□□□□ -1.85
RTR1YER139C FDC1Q03034 503 aa3.47□□□□□ -1.85
RTR1YER139C COG8Q04632 607 aa3.47□□□□□ -1.85
RTR1YER139C YLR407WQ06070 228 aa3.47□□□□□ -1.85
RTR1YER139C YPS7Q06325 596 aa3.47□□□□□ -1.85
RTR1YER139C RNR3P21672 869 aaKnown RBP3.46□□□□□ -1.86
RTR1YER139C MGM1P32266 881 aa3.46□□□□□ -1.86
RTR1YER139C PXA1P41909 870 aa3.46□□□□□ -1.86
RTR1YER139C YGR054WP53235 642 aaKnown RBP3.46□□□□□ -1.86
RTR1YER139C YMR210WQ03649 449 aa3.46□□□□□ -1.86
RTR1YER139C CEF1Q03654 590 aaPredicted RBP3.46□□□□□ -1.86
RTR1YER139C MRPL1Q04599 285 aa3.46□□□□□ -1.86
RTR1YER139C ENT2Q05785 613 aa3.46□□□□□ -1.86
RTR1YER139C BUD7Q08754 746 aa3.46□□□□□ -1.86
RTR1YER139C NDD1Q08887 554 aa3.46□□□□□ -1.86
RTR1YER139C GIN4Q12263 1142 aa3.46□□□□□ -1.86
RTR1YER139C YOR111WQ99210 232 aa3.46□□□□□ -1.86
RTR1YER139C SSD1P24276 1250 aaKnown RBP RIP-Chip data3.45□□□□□ -1.86not detected
RTR1YER139C ENP2P48234 707 aaKnown RBP3.45□□□□□ -1.86
RTR1YER139C YCP4P25349 247 aaKnown RBP3.44□□□□□ -1.86
RTR1YER139C SRP40P32583 406 aaPredicted RBP3.44□□□□□ -1.86
RTR1YER139C ATO2P32907 282 aa3.44□□□□□ -1.86
RTR1YER139C MAL31P38156 614 aa3.44□□□□□ -1.86
RTR1YER139C CRG1P38892 291 aaRIP-Chip data3.44□□□□□ -1.86not detected
RTR1YER139C FLO5P38894 1075 aa3.44□□□□□ -1.86
RTR1YER139C GFD1Q04839 188 aaKnown RBP3.44□□□□□ -1.86
RTR1YER139C TPO3Q06451 622 aa3.44□□□□□ -1.86
RTR1YER139C SPN1Q06505 410 aaPredicted RBP3.44□□□□□ -1.86
RTR1YER139C SFL1P20134 766 aa3.43□□□□□ -1.86
RTR1YER139C FTR1P40088 404 aa3.43□□□□□ -1.86
RTR1YER139C TDA10P42938 290 aa3.43□□□□□ -1.86
RTR1YER139C SAP4P53036 818 aa3.43□□□□□ -1.86
RTR1YER139C YTH1Q06102 208 aaPredicted RBP3.43□□□□□ -1.86
RTR1YER139C SNA4Q07549 140 aa3.43□□□□□ -1.86
RTR1YER139C SRL1Q08673 210 aa3.43□□□□□ -1.86
RTR1YER139C YOR131CQ12486 218 aa3.43□□□□□ -1.86
RTR1YER139C PRE4P30657 266 aa3.42□□□□□ -1.86
RTR1YER139C LOT5P34234 306 aa3.42□□□□□ -1.86
RTR1YER139C SAE2P46946 345 aa3.42□□□□□ -1.86
RTR1YER139C LYS20P48570 428 aaKnown RBP3.42□□□□□ -1.86
RTR1YER139C COP1P53622 1201 aaKnown RBP3.42□□□□□ -1.86
RTR1YER139C YPL071CQ02864 156 aa3.42□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 36.8 ms