RNA–Protein interactions for RNA: ENST00000589520.1

VPS25-203, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 3

Gene VPS25, Length 639 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-203ENST00000589520 KRT85P78386 507 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 GRAPQ13588 217 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 NFIXQ14938 502 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 R3HDM1Q15032 1099 aaKnown RBP12.23□□□□□ -0.45
VPS25-203ENST00000589520 SPTY2D1Q68D10 685 aaPredicted RBP12.23□□□□□ -0.45
VPS25-203ENST00000589520 TTLL5Q6EMB2 1281 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 NAA16Q6N069 864 aaPredicted RBP12.23□□□□□ -0.45
VPS25-203ENST00000589520 GIMAP6Q6P9H5 292 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 C15orf52Q6ZUT6 534 aaKnown RBP12.23□□□□□ -0.45
VPS25-203ENST00000589520 IFNL3Q8IZI9 196 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 FLAD1Q8NFF5 587 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 GRAPLQ8TC17 118 aaPredicted RBP12.23□□□□□ -0.45
VPS25-203ENST00000589520 TCEANC2Q96MN5 208 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 SCAND2PQ9GZW5 306 aaPredicted RBP12.23□□□□□ -0.45
VPS25-203ENST00000589520 NAPBQ9H115 298 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 C4BP0C0L5 1744 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 COL24A1Q17RW2 1714 aa12.23□□□□□ -0.45
VPS25-203ENST00000589520 ELP1O95163 1332 aa12.22□□□□□ -0.45
VPS25-203ENST00000589520 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.22□□□□□ -0.45
VPS25-203ENST00000589520 PLSCR1O15162 318 aa12.22□□□□□ -0.45
VPS25-203ENST00000589520 PRC1O43663 620 aa12.22□□□□□ -0.45
VPS25-203ENST00000589520 BBOX1O75936 387 aa12.22□□□□□ -0.45
VPS25-203ENST00000589520 PDIA3P30101 505 aaKnown RBP12.22□□□□□ -0.45
VPS25-203ENST00000589520 SCRN1Q12765 414 aa12.22□□□□□ -0.45
VPS25-203ENST00000589520 FAM182BQ5T319 152 aa12.22□□□□□ -0.45
VPS25-203ENST00000589520 C3orf67Q6ZVT6 689 aa12.22□□□□□ -0.45
VPS25-203ENST00000589520 USP48Q86UV5 1035 aa12.22□□□□□ -0.45
VPS25-203ENST00000589520 TMTC2Q8N394 836 aa12.22□□□□□ -0.45
VPS25-203ENST00000589520 RBM17Q96I25 401 aaKnown RBP12.22□□□□□ -0.45
VPS25-203ENST00000589520 VPS37CA5D8V6 355 aaPredicted RBP12.21□□□□□ -0.45
VPS25-203ENST00000589520 H3BQV1 296 aa12.21□□□□□ -0.45
VPS25-203ENST00000589520 MBD4O95243 580 aa12.21□□□□□ -0.45
VPS25-203ENST00000589520 CYP7A1P22680 504 aa12.21□□□□□ -0.45
VPS25-203ENST00000589520 APOBRQ0VD83 1088 aa12.21□□□□□ -0.45
VPS25-203ENST00000589520 STK3Q13188 491 aa12.21□□□□□ -0.45
VPS25-203ENST00000589520 SF3B2Q13435 895 aaKnown RBP12.21□□□□□ -0.45
VPS25-203ENST00000589520 FOXD4L5Q5VV16 416 aaPredicted RBP12.21□□□□□ -0.45
VPS25-203ENST00000589520 CPLX2Q6PUV4 134 aaKnown RBP12.21□□□□□ -0.45
VPS25-203ENST00000589520 CERS3Q8IU89 383 aa12.21□□□□□ -0.45
VPS25-203ENST00000589520 FOXD4L4Q8WXT5 416 aaPredicted RBP12.21□□□□□ -0.45
VPS25-203ENST00000589520 GRPEL1Q9HAV7 217 aa12.21□□□□□ -0.45
VPS25-203ENST00000589520 LRRC4BQ9NT99 713 aa12.21□□□□□ -0.45
VPS25-203ENST00000589520 RAI14Q9P0K7 980 aa12.21□□□□□ -0.45
VPS25-203ENST00000589520 ANGEL1Q9UNK9 670 aaKnown RBP12.21□□□□□ -0.45
VPS25-203ENST00000589520 SLC4A4Q9Y6R1 1079 aa12.21□□□□□ -0.45
VPS25-203ENST00000589520 SBF2Q86WG5 1849 aa12.21□□□□□ -0.46
VPS25-203ENST00000589520 SALL1Q9NSC2 1324 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 MAGEB6P1A0A0J9YX57 407 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 GSG1L2A8MUP6 293 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 CDKL5O76039 1030 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 SERPINB2P05120 415 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 GYS1P13807 737 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 ATP2B4P23634 1241 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 LIFRP42702 1097 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 GYG1P46976 350 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 RCAN1P53805 252 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 SART3Q15020 963 aaKnown RBP12.2□□□□□ -0.46
VPS25-203ENST00000589520 PPP2R5BQ15173 497 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 AKNAD1Q5T1N1 836 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 CAVIN1Q6NZI2 390 aaKnown RBP12.2□□□□□ -0.46
VPS25-203ENST00000589520 MFSD6Q6ZSS7 791 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 NSUN7Q8NE18 718 aaKnown RBP12.2□□□□□ -0.46
VPS25-203ENST00000589520 WDR66Q8TBY9 1149 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 GPT2Q8TD30 523 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 STAG1Q8WVM7 1258 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 RPGRQ92834 1020 aaKnown RBP12.2□□□□□ -0.46
VPS25-203ENST00000589520 ANAPC4Q9UJX5 808 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 CFAP45Q9UL16 551 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 TAF1LQ8IZX4 1826 aa12.2□□□□□ -0.46
VPS25-203ENST00000589520 MYH7P12883 1935 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 XDHP47989 1333 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 KLRG2A4D1S0 409 aaPredicted RBP12.19□□□□□ -0.46
VPS25-203ENST00000589520 SNAP23O00161 211 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 HOXA10P31260 410 aaPredicted RBP12.19□□□□□ -0.46
VPS25-203ENST00000589520 TDO2P48775 406 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 HAND2P61296 217 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 TXNRD1Q16881 649 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 ZSCAN23Q3MJ62 389 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 CRY2Q49AN0 593 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 PRR5LQ6MZQ0 368 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 SYNE3Q6ZMZ3 975 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 SGMS1Q86VZ5 419 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 NLGN1Q8N2Q7 840 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 ANP32BQ92688 251 aaKnown RBP12.19□□□□□ -0.46
VPS25-203ENST00000589520 CRAMP1Q96RY5 1269 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 BRIP1Q9BX63 1249 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 LRRC2Q9BYS8 371 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 ARMT1Q9H993 441 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 ABCF2Q9UG63 623 aa12.19□□□□□ -0.46
VPS25-203ENST00000589520 PTPDC1A2A3K4 754 aa12.18□□□□□ -0.46
VPS25-203ENST00000589520 SH2B2O14492 632 aaPredicted RBP12.18□□□□□ -0.46
VPS25-203ENST00000589520 CPLX1O14810 134 aa12.18□□□□□ -0.46
VPS25-203ENST00000589520 TRIM37O94972 964 aa12.18□□□□□ -0.46
VPS25-203ENST00000589520 XRCC6P12956 609 aaKnown RBP eCLIP12.18□□□□□ -0.46
VPS25-203ENST00000589520 GSTO1P78417 241 aa12.18□□□□□ -0.46
VPS25-203ENST00000589520 COL9A3Q14050 684 aaPredicted RBP12.18□□□□□ -0.46
VPS25-203ENST00000589520 LRSAM1Q6UWE0 723 aa12.18□□□□□ -0.46
VPS25-203ENST00000589520 ZNF804AQ7Z570 1209 aa12.18□□□□□ -0.46
VPS25-203ENST00000589520 ZNF396Q96N95 335 aaPredicted RBP12.18□□□□□ -0.46
VPS25-203ENST00000589520 ANKIB1Q9P2G1 1089 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 80.6 ms