RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 TXNRD3Q86VQ6 643 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 PROM2Q8N271 834 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 ANP32BQ92688 251 aaKnown RBP6.42□□□□□ -1.38
VPS13C-209ENST00000560637 NEK1Q96PY6 1258 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 UIMC1Q96RL1 719 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 BRIP1Q9BX63 1249 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 TAOK3Q9H2K8 898 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 IBTKQ9P2D0 1353 aaPredicted RBP6.42□□□□□ -1.38
VPS13C-209ENST00000560637 USP32Q8NFA0 1604 aa6.42□□□□□ -1.38
VPS13C-209ENST00000560637 IBSPP21815 317 aaPredicted RBP6.41□□□□□ -1.38
VPS13C-209ENST00000560637 ZNF589Q86UQ0 364 aaPredicted RBP6.41□□□□□ -1.38
VPS13C-209ENST00000560637 KIF3AQ9Y496 699 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 KLF18A0A0U1RQI7 1052 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 ZGPATQ8N5A5 531 aaKnown RBP6.41□□□□□ -1.38
VPS13C-209ENST00000560637 WDR66Q8TBY9 1149 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 UPF1Q92900 1129 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS13C-209ENST00000560637 PIH1D3Q9NQM4 214 aaKnown RBP6.41□□□□□ -1.38
VPS13C-209ENST00000560637 INCENPQ9NQS7 918 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 BSDC1Q9NW68 430 aaPredicted RBP6.41□□□□□ -1.38
VPS13C-209ENST00000560637 TCEAL9Q9UHQ7 104 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.41□□□□□ -1.38
VPS13C-209ENST00000560637 NFAT5O94916 1531 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 DISP2A7MBM2 1401 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 CNTNAP4Q9C0A0 1308 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 KIF20BQ96Q89 1820 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 ATP5JP18859 108 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 BTDP43251 543 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 PDE4BQ07343 736 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 APOBRQ0VD83 1088 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 UBE4AQ14139 1066 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 LARP1BQ659C4 914 aaKnown RBP6.41□□□□□ -1.38
VPS13C-209ENST00000560637 CMTR1Q8N1G2 835 aaKnown RBP6.41□□□□□ -1.38
VPS13C-209ENST00000560637 BICD2Q8TD16 824 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 GBP4Q96PP9 640 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 GDPD2Q9HCC8 539 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 PALD1Q9ULE6 856 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 SLC12A7Q9Y666 1083 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 CCDC171Q6TFL3 1326 aa6.41□□□□□ -1.38
VPS13C-209ENST00000560637 H7C1D1 291 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 ZFYP08048 801 aaPredicted RBP6.4□□□□□ -1.38
VPS13C-209ENST00000560637 BRPF1P55201 1214 aaPredicted RBP6.4□□□□□ -1.38
VPS13C-209ENST00000560637 GSTO1P78417 241 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 SAFBQ15424 915 aaKnown RBP eCLIP6.4□□□□□ -1.38
VPS13C-209ENST00000560637 CREB3L3Q68CJ9 461 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 DPY19L2Q6NUT2 758 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 APPBP2Q92624 585 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 PUS7LQ9H0K6 701 aaKnown RBP6.4□□□□□ -1.38
VPS13C-209ENST00000560637 CABP5Q9NP86 173 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 RGS12O14924 1447 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 ABCC12Q96J65 1359 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 GOLGA8AA7E2F4 631 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 RASSF7Q02833 373 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 Q6ZUG5 572 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 ATG9AQ7Z3C6 839 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 TEKT1Q969V4 418 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 FHDC1Q9C0D6 1143 aaPredicted RBP6.4□□□□□ -1.38
VPS13C-209ENST00000560637 TDRD3Q9H7E2 651 aaKnown RBP6.4□□□□□ -1.38
VPS13C-209ENST00000560637 BCL2L12Q9HB09 334 aa6.4□□□□□ -1.38
VPS13C-209ENST00000560637 NCOA5Q9HCD5 579 aaKnown RBP6.4□□□□□ -1.38
VPS13C-209ENST00000560637 DDX49Q9Y6V7 483 aaKnown RBP6.4□□□□□ -1.38
VPS13C-209ENST00000560637 COL14A1Q05707 1796 aaKnown RBP6.4□□□□□ -1.38
VPS13C-209ENST00000560637 K7ELQ4 463 aaPredicted RBP6.4□□□□□ -1.39
VPS13C-209ENST00000560637 PLSCR1O15162 318 aa6.4□□□□□ -1.39
VPS13C-209ENST00000560637 PRC1O43663 620 aa6.4□□□□□ -1.39
VPS13C-209ENST00000560637 POLA2Q14181 598 aa6.4□□□□□ -1.39
VPS13C-209ENST00000560637 PLS1Q14651 629 aa6.4□□□□□ -1.39
VPS13C-209ENST00000560637 TRIM22Q8IYM9 498 aa6.4□□□□□ -1.39
VPS13C-209ENST00000560637 NCOA7Q8NI08 942 aa6.4□□□□□ -1.39
VPS13C-209ENST00000560637 CTCFLQ8NI51 663 aaPredicted RBP6.4□□□□□ -1.39
VPS13C-209ENST00000560637 CD209Q9NNX6 404 aa6.4□□□□□ -1.39
VPS13C-209ENST00000560637 SLIT2O94813 1529 aa6.4□□□□□ -1.39
VPS13C-209ENST00000560637 ECE2O60344 883 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 TRIM28Q13263 835 aaKnown RBP6.39□□□□□ -1.39
VPS13C-209ENST00000560637 LCORLQ8N3X6 602 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 OSBP2Q969R2 916 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 TBC1D2Q9BYX2 928 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 CYP2E1P05181 493 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-209ENST00000560637 KRT32Q14532 448 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 WTAPQ15007 396 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 TBC1D16Q8TBP0 767 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 DYNLL2Q96FJ2 89 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 FAM84BQ96KN1 310 aaPredicted RBP6.39□□□□□ -1.39
VPS13C-209ENST00000560637 SLC26A6Q9BXS9 759 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 KAT14Q9H8E8 782 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 RIPOR2Q9Y4F9 1068 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 SGSM2O43147 1006 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 GDF11O95390 407 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 USP17L8P0C7I0 530 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 IFIT1BQ5T764 474 aaKnown RBP6.39□□□□□ -1.39
VPS13C-209ENST00000560637 SPICE1Q8N0Z3 855 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 SUPT20HQ8NEM7 779 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 HAUS7Q99871 368 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 MTFR1LQ9H019 292 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 GPCPD1Q9NPB8 672 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 KCNQ5Q9NR82 932 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 LEMD3Q9Y2U8 911 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 PNPLA7Q6ZV29 1317 aa6.39□□□□□ -1.39
VPS13C-209ENST00000560637 SPDYE4A6NLX3 237 aa6.38□□□□□ -1.39
VPS13C-209ENST00000560637 POLRMTO00411 1230 aaKnown RBP6.38□□□□□ -1.39
VPS13C-209ENST00000560637 MECOMQ03112 1051 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 97.8 ms