RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 MKRN3Q13064 507 aaKnown RBP22.36■■□□□ 1.17
SQSTM1-204ENST00000453046 RASA3Q14644 834 aa22.36■■□□□ 1.17
SQSTM1-204ENST00000453046 INTS3Q68E01 1043 aaKnown RBP22.36■■□□□ 1.17
SQSTM1-204ENST00000453046 ATG9AQ7Z3C6 839 aa22.36■■□□□ 1.17
SQSTM1-204ENST00000453046 DZIP1LQ8IYY4 767 aaKnown RBP22.36■■□□□ 1.17
SQSTM1-204ENST00000453046 ZNF70Q9UC06 446 aaPredicted RBP22.36■■□□□ 1.17
SQSTM1-204ENST00000453046 FZD1Q9UP38 647 aa22.36■■□□□ 1.17
SQSTM1-204ENST00000453046 GTF3C3Q9Y5Q9 886 aa22.36■■□□□ 1.17
SQSTM1-204ENST00000453046 AOX1Q06278 1338 aa22.35■■□□□ 1.17
SQSTM1-204ENST00000453046 CIAO1O76071 339 aa22.35■■□□□ 1.17
SQSTM1-204ENST00000453046 ERICH6BQ5W0A0 696 aa22.35■■□□□ 1.17
SQSTM1-204ENST00000453046 ZKSCAN2Q63HK3 967 aa22.35■■□□□ 1.17
SQSTM1-204ENST00000453046 CASP8AP2Q9UKL3 1982 aa22.34■■□□□ 1.17
SQSTM1-204ENST00000453046 PDE3AQ14432 1141 aa22.34■■□□□ 1.17
SQSTM1-204ENST00000453046 GRIK5Q16478 980 aa22.34■■□□□ 1.17
SQSTM1-204ENST00000453046 ATP2B3Q16720 1220 aa22.34■■□□□ 1.17
SQSTM1-204ENST00000453046 SPDYE2Q495Y8 402 aa22.34■■□□□ 1.17
SQSTM1-204ENST00000453046 LDLRAD1Q5T700 205 aa22.34■■□□□ 1.17
SQSTM1-204ENST00000453046 NBPF12Q5TAG4 269 aaPredicted RBP22.34■■□□□ 1.17
SQSTM1-204ENST00000453046 TEKT1Q969V4 418 aa22.34■■□□□ 1.17
SQSTM1-204ENST00000453046 SLC10A4Q96EP9 437 aa22.34■■□□□ 1.17
SQSTM1-204ENST00000453046 ECM29Q5VYK3 1845 aa22.34■■□□□ 1.17
SQSTM1-204ENST00000453046 MS4A1P11836 297 aa22.33■■□□□ 1.17
SQSTM1-204ENST00000453046 IL15P40933 162 aaPredicted RBP22.33■■□□□ 1.17
SQSTM1-204ENST00000453046 TNNI2P48788 182 aa22.33■■□□□ 1.17
SQSTM1-204ENST00000453046 HDLBPQ00341 1268 aaKnown RBP22.33■■□□□ 1.17
SQSTM1-204ENST00000453046 PA2G4Q9UQ80 394 aaKnown RBP22.33■■□□□ 1.17
SQSTM1-204ENST00000453046 AKAP11Q9UKA4 1901 aa22.33■■□□□ 1.16
SQSTM1-204ENST00000453046 TCP10L2B9ZVM9 353 aa22.32■■□□□ 1.16
SQSTM1-204ENST00000453046 TRIM27P14373 513 aa22.32■■□□□ 1.16
SQSTM1-204ENST00000453046 IREB2P48200 963 aaKnown RBP22.32■■□□□ 1.16
SQSTM1-204ENST00000453046 SREBF2Q12772 1141 aa22.32■■□□□ 1.16
SQSTM1-204ENST00000453046 DGKZQ13574 1117 aa22.32■■□□□ 1.16
SQSTM1-204ENST00000453046 MAP3K11Q16584 847 aa22.32■■□□□ 1.16
SQSTM1-204ENST00000453046 ATF7IPQ6VMQ6 1270 aa22.32■■□□□ 1.16
SQSTM1-204ENST00000453046 MCOLN1Q9GZU1 580 aa22.32■■□□□ 1.16
SQSTM1-204ENST00000453046 MAST3O60307 1309 aa22.31■■□□□ 1.16
SQSTM1-204ENST00000453046 WDR66Q8TBY9 1149 aa22.31■■□□□ 1.16
SQSTM1-204ENST00000453046 CLUAP1Q96AJ1 413 aa22.31■■□□□ 1.16
SQSTM1-204ENST00000453046 COPRSQ9NQ92 184 aa22.31■■□□□ 1.16
SQSTM1-204ENST00000453046 GNL3LQ9NVN8 582 aaKnown RBP22.31■■□□□ 1.16
SQSTM1-204ENST00000453046 SUGT1Q9Y2Z0 365 aa22.31■■□□□ 1.16
SQSTM1-204ENST00000453046 ARAP2Q8WZ64 1704 aa22.31■■□□□ 1.16
SQSTM1-204ENST00000453046 SRGAP3O43295 1099 aa22.3■■□□□ 1.16
SQSTM1-204ENST00000453046 TM4SF4P48230 202 aa22.3■■□□□ 1.16
SQSTM1-204ENST00000453046 IRX6P78412 446 aaPredicted RBP22.3■■□□□ 1.16
SQSTM1-204ENST00000453046 SPRYD7Q5W111 196 aa22.3■■□□□ 1.16
SQSTM1-204ENST00000453046 TMOD2Q9NZR1 351 aa22.3■■□□□ 1.16
SQSTM1-204ENST00000453046 CCDC85CA6NKD9 419 aa22.29■■□□□ 1.16
SQSTM1-204ENST00000453046 MRIQ9BWK5 157 aa22.29■■□□□ 1.16
SQSTM1-204ENST00000453046 SSC5DA1L4H1 1573 aa22.29■■□□□ 1.16
SQSTM1-204ENST00000453046 UNCXA6NJT0 531 aa22.28■■□□□ 1.16
SQSTM1-204ENST00000453046 USP2O75604 605 aaPredicted RBP22.28■■□□□ 1.16
SQSTM1-204ENST00000453046 TBC1D8O95759 1140 aa22.28■■□□□ 1.16
SQSTM1-204ENST00000453046 CLMNQ96JQ2 1002 aa22.28■■□□□ 1.16
SQSTM1-204ENST00000453046 TMEM39BQ9GZU3 492 aa22.28■■□□□ 1.16
SQSTM1-204ENST00000453046 TNNQ9UQP3 1299 aa22.28■■□□□ 1.16
SQSTM1-204ENST00000453046 GNAI2P04899 355 aa22.27■■□□□ 1.16
SQSTM1-204ENST00000453046 FTSJ3Q8IY81 847 aaKnown RBP22.27■■□□□ 1.16
SQSTM1-204ENST00000453046 ANKRD13AQ8IZ07 590 aa22.27■■□□□ 1.16
SQSTM1-204ENST00000453046 ZDHHC15Q96MV8 337 aa22.27■■□□□ 1.16
SQSTM1-204ENST00000453046 ZBTB48P10074 688 aaPredicted RBP22.26■■□□□ 1.15
SQSTM1-204ENST00000453046 CACNB3P54284 484 aa22.26■■□□□ 1.15
SQSTM1-204ENST00000453046 C20orf194Q5TEA3 1177 aa22.26■■□□□ 1.15
SQSTM1-204ENST00000453046 HHIPL2Q6UWX4 724 aa22.26■■□□□ 1.15
SQSTM1-204ENST00000453046 MANSC4A6NHS7 340 aaPredicted RBP22.25■■□□□ 1.15
SQSTM1-204ENST00000453046 INHBEP58166 350 aa22.25■■□□□ 1.15
SQSTM1-204ENST00000453046 MTX1Q13505 466 aa22.25■■□□□ 1.15
SQSTM1-204ENST00000453046 WNK4Q96J92 1243 aa22.25■■□□□ 1.15
SQSTM1-204ENST00000453046 TEPSINQ96N21 525 aa22.25■■□□□ 1.15
SQSTM1-204ENST00000453046 DENND2AQ9ULE3 1009 aa22.25■■□□□ 1.15
SQSTM1-204ENST00000453046 SEMA3EO15041 775 aa22.24■■□□□ 1.15
SQSTM1-204ENST00000453046 PHKA1P46020 1223 aa22.24■■□□□ 1.15
SQSTM1-204ENST00000453046 TIMM10P62072 90 aa22.24■■□□□ 1.15
SQSTM1-204ENST00000453046 APOBEC3HQ6NTF7 200 aaKnown RBP22.24■■□□□ 1.15
SQSTM1-204ENST00000453046 CDAN1Q8IWY9 1227 aa22.24■■□□□ 1.15
SQSTM1-204ENST00000453046 AKAP2Q9Y2D5 859 aa22.24■■□□□ 1.15
SQSTM1-204ENST00000453046 ALDH1A1P00352 501 aa22.23■■□□□ 1.15
SQSTM1-204ENST00000453046 LDHBP07195 334 aaKnown RBP22.23■■□□□ 1.15
SQSTM1-204ENST00000453046 ADORA1P30542 326 aa22.23■■□□□ 1.15
SQSTM1-204ENST00000453046 TFCP2Q12800 502 aa22.23■■□□□ 1.15
SQSTM1-204ENST00000453046 CCDC102BQ68D86 513 aa22.23■■□□□ 1.15
SQSTM1-204ENST00000453046 TMEM57Q8N5G2 664 aa22.23■■□□□ 1.15
SQSTM1-204ENST00000453046 PANK1Q8TE04 598 aa22.23■■□□□ 1.15
SQSTM1-204ENST00000453046 CRBNQ96SW2 442 aa22.23■■□□□ 1.15
SQSTM1-204ENST00000453046 PRDX5P30044 214 aa22.22■■□□□ 1.15
SQSTM1-204ENST00000453046 CTU1Q7Z7A3 348 aaKnown RBP22.22■■□□□ 1.15
SQSTM1-204ENST00000453046 FAM83AQ86UY5 434 aa22.22■■□□□ 1.15
SQSTM1-204ENST00000453046 ELP3Q9H9T3 547 aa22.22■■□□□ 1.15
SQSTM1-204ENST00000453046 MYH13Q9UKX3 1938 aa22.21■■□□□ 1.15
SQSTM1-204ENST00000453046 A0A1B0GUL7 405 aa22.21■■□□□ 1.15
SQSTM1-204ENST00000453046 RLBP1P12271 317 aa22.21■■□□□ 1.15
SQSTM1-204ENST00000453046 G3BP1Q13283 466 aaKnown RBP eCLIP22.21■■□□□ 1.15
SQSTM1-204ENST00000453046 DIXDC1Q155Q3 683 aa22.21■■□□□ 1.15
SQSTM1-204ENST00000453046 FKBP1CQ5VVH2 108 aa22.21■■□□□ 1.15
SQSTM1-204ENST00000453046 ZNF296Q8WUU4 475 aaPredicted RBP22.21■■□□□ 1.15
SQSTM1-204ENST00000453046 HOOK2Q96ED9 719 aa22.21■■□□□ 1.15
SQSTM1-204ENST00000453046 NEUROD6Q96NK8 337 aa22.21■■□□□ 1.15
SQSTM1-204ENST00000453046 GPR25O00155 361 aa22.2■■□□□ 1.14
SQSTM1-204ENST00000453046 MAP3K9P80192 1104 aa22.2■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 107 ms