RNA–Protein interactions for RNA: ENST00000430038.5

CPSF4-203, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 735 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-203ENST00000430038 MYO1BO43795 1136 aa21.41■■□□□ 1.02
CPSF4-203ENST00000430038 CACNB3P54284 484 aa21.41■■□□□ 1.02
CPSF4-203ENST00000430038 PUM3Q15397 648 aaKnown RBP21.41■■□□□ 1.02
CPSF4-203ENST00000430038 VPS37DQ86XT2 251 aa21.41■■□□□ 1.02
CPSF4-203ENST00000430038 TCP10L2B9ZVM9 353 aa21.4■■□□□ 1.02
CPSF4-203ENST00000430038 UBTFL1P0CB47 393 aaPredicted RBP21.4■■□□□ 1.02
CPSF4-203ENST00000430038 CAVIN4Q5BKX8 364 aa21.4■■□□□ 1.02
CPSF4-203ENST00000430038 ZNF296Q8WUU4 475 aaPredicted RBP21.4■■□□□ 1.02
CPSF4-203ENST00000430038 SLC10A4Q96EP9 437 aa21.4■■□□□ 1.02
CPSF4-203ENST00000430038 TMEM39BQ9GZU3 492 aa21.4■■□□□ 1.02
CPSF4-203ENST00000430038 RGS19P49795 217 aa21.39■■□□□ 1.01
CPSF4-203ENST00000430038 WNK4Q96J92 1243 aa21.39■■□□□ 1.01
CPSF4-203ENST00000430038 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP21.39■■□□□ 1.01
CPSF4-203ENST00000430038 KIF16BQ96L93 1317 aa21.38■■□□□ 1.01
CPSF4-203ENST00000430038 PPP1R12BO60237 982 aaPredicted RBP21.38■■□□□ 1.01
CPSF4-203ENST00000430038 BCAR3O75815 825 aa21.38■■□□□ 1.01
CPSF4-203ENST00000430038 SUPT20HL1Q3ZLR7 823 aa21.38■■□□□ 1.01
CPSF4-203ENST00000430038 APOBEC3HQ6NTF7 200 aaKnown RBP21.38■■□□□ 1.01
CPSF4-203ENST00000430038 API5Q9BZZ5 524 aaKnown RBP21.38■■□□□ 1.01
CPSF4-203ENST00000430038 IGF2BP3O00425 579 aaKnown RBP eCLIP21.37■■□□□ 1.01
CPSF4-203ENST00000430038 FRAT2O75474 233 aaPredicted RBP21.37■■□□□ 1.01
CPSF4-203ENST00000430038 IFIT1P09914 478 aaKnown RBP21.37■■□□□ 1.01
CPSF4-203ENST00000430038 INTS3Q68E01 1043 aaKnown RBP21.37■■□□□ 1.01
CPSF4-203ENST00000430038 LPIN2Q92539 896 aa21.37■■□□□ 1.01
CPSF4-203ENST00000430038 GPR25O00155 361 aa21.36■■□□□ 1.01
CPSF4-203ENST00000430038 HDLBPQ00341 1268 aaKnown RBP21.36■■□□□ 1.01
CPSF4-203ENST00000430038 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.36■■□□□ 1.01
CPSF4-203ENST00000430038 MIER1Q8N108 512 aa21.36■■□□□ 1.01
CPSF4-203ENST00000430038 TBC1D22AQ8WUA7 517 aa21.36■■□□□ 1.01
CPSF4-203ENST00000430038 CNKSR2Q8WXI2 1034 aa21.36■■□□□ 1.01
CPSF4-203ENST00000430038 TNRC18O15417 2968 aaPredicted RBP21.35■■□□□ 1.01
CPSF4-203ENST00000430038 CIAO1O76071 339 aa21.35■■□□□ 1.01
CPSF4-203ENST00000430038 CTU1Q7Z7A3 348 aaKnown RBP21.35■■□□□ 1.01
CPSF4-203ENST00000430038 ARHGAP45Q92619 1136 aa21.35■■□□□ 1.01
CPSF4-203ENST00000430038 ZDHHC15Q96MV8 337 aa21.35■■□□□ 1.01
CPSF4-203ENST00000430038 PTPN18Q99952 460 aa21.35■■□□□ 1.01
CPSF4-203ENST00000430038 MRIQ9BWK5 157 aa21.35■■□□□ 1.01
CPSF4-203ENST00000430038 CFHR5Q9BXR6 569 aa21.35■■□□□ 1.01
CPSF4-203ENST00000430038 SLC5A1P13866 664 aa21.34■■□□□ 1.01
CPSF4-203ENST00000430038 ADORA1P30542 326 aa21.34■■□□□ 1.01
CPSF4-203ENST00000430038 PHKA1P46020 1223 aa21.34■■□□□ 1.01
CPSF4-203ENST00000430038 SREBF2Q12772 1141 aa21.34■■□□□ 1.01
CPSF4-203ENST00000430038 ATP2B3Q16720 1220 aa21.34■■□□□ 1.01
CPSF4-203ENST00000430038 IFNL1Q8IU54 200 aa21.34■■□□□ 1.01
CPSF4-203ENST00000430038 TEKT1Q969V4 418 aa21.34■■□□□ 1.01
CPSF4-203ENST00000430038 ELP3Q9H9T3 547 aa21.34■■□□□ 1.01
CPSF4-203ENST00000430038 COPRSQ9NQ92 184 aa21.34■■□□□ 1.01
CPSF4-203ENST00000430038 ZBTB48P10074 688 aaPredicted RBP21.33■■□□□ 1.01
CPSF4-203ENST00000430038 TRIM27P14373 513 aa21.33■■□□□ 1.01
CPSF4-203ENST00000430038 IREB2P48200 963 aaKnown RBP21.33■■□□□ 1.01
CPSF4-203ENST00000430038 CEP126Q9P2H0 1117 aa21.33■■□□□ 1.01
CPSF4-203ENST00000430038 MANSC4A6NHS7 340 aaPredicted RBP21.32■■□□□ 1
CPSF4-203ENST00000430038 PRDX5P30044 214 aa21.32■■□□□ 1
CPSF4-203ENST00000430038 CAP1Q01518 475 aa21.32■■□□□ 1
CPSF4-203ENST00000430038 TNFAIP1Q13829 316 aa21.32■■□□□ 1
CPSF4-203ENST00000430038 DIXDC1Q155Q3 683 aa21.32■■□□□ 1
CPSF4-203ENST00000430038 ANKRD13AQ8IZ07 590 aa21.32■■□□□ 1
CPSF4-203ENST00000430038 FBXO3Q9UK99 471 aa21.32■■□□□ 1
CPSF4-203ENST00000430038 UNCXA6NJT0 531 aa21.31■■□□□ 1
CPSF4-203ENST00000430038 TIMM10P62072 90 aa21.31■■□□□ 1
CPSF4-203ENST00000430038 NOM1Q5C9Z4 860 aaKnown RBP21.31■■□□□ 1
CPSF4-203ENST00000430038 HHIPL2Q6UWX4 724 aa21.31■■□□□ 1
CPSF4-203ENST00000430038 MS4A4AQ96JQ5 239 aa21.31■■□□□ 1
CPSF4-203ENST00000430038 MYH2Q9UKX2 1941 aa21.31■■□□□ 1
CPSF4-203ENST00000430038 HTTP42858 3142 aa21.3■■□□□ 1
CPSF4-203ENST00000430038 IL15P40933 162 aaPredicted RBP21.3■■□□□ 1
CPSF4-203ENST00000430038 VGLL4Q14135 290 aa21.3■■□□□ 1
CPSF4-203ENST00000430038 DDX55Q8NHQ9 600 aaKnown RBP eCLIP21.3■■□□□ 1
CPSF4-203ENST00000430038 CLUAP1Q96AJ1 413 aa21.3■■□□□ 1
CPSF4-203ENST00000430038 OPTNQ96CV9 577 aa21.3■■□□□ 1
CPSF4-203ENST00000430038 SUGT1Q9Y2Z0 365 aa21.3■■□□□ 1
CPSF4-203ENST00000430038 DAGLAQ9Y4D2 1042 aa21.3■■□□□ 1
CPSF4-203ENST00000430038 AK9Q5TCS8 1911 aa21.29■■□□□ 1
CPSF4-203ENST00000430038 TESPA1A2RU30 521 aaPredicted RBP21.29■■□□□ 1
CPSF4-203ENST00000430038 INHBEP58166 350 aa21.29■■□□□ 1
CPSF4-203ENST00000430038 WDR66Q8TBY9 1149 aa21.29■■□□□ 1
CPSF4-203ENST00000430038 FRAT1Q92837 279 aaPredicted RBP21.29■■□□□ 1
CPSF4-203ENST00000430038 HPS5Q9UPZ3 1129 aa21.29■■□□□ 1
CPSF4-203ENST00000430038 SRGAP3O43295 1099 aa21.28■■□□□ 1
CPSF4-203ENST00000430038 SOX10P56693 466 aa21.28■■□□□ 1
CPSF4-203ENST00000430038 MAP3K9P80192 1104 aa21.28■■□□□ 1
CPSF4-203ENST00000430038 TFCP2Q12800 502 aa21.28■■□□□ 1
CPSF4-203ENST00000430038 MTX1Q13505 466 aa21.28■■□□□ 1
CPSF4-203ENST00000430038 CCDC102BQ68D86 513 aa21.28■■□□□ 1
CPSF4-203ENST00000430038 CDC42EP5Q6NZY7 148 aa21.28■■□□□ 1
CPSF4-203ENST00000430038 ATF7IPQ6VMQ6 1270 aa21.28■■□□□ 1
CPSF4-203ENST00000430038 CENPFP49454 3210 aa21.27■■□□□ 1
CPSF4-203ENST00000430038 PNMA6EA0A0J9YXQ4 647 aa21.27■■□□□ 1
CPSF4-203ENST00000430038 FKTNO75072 461 aa21.27■■□□□ 1
CPSF4-203ENST00000430038 TNNI2P48788 182 aa21.27■■□□□ 1
CPSF4-203ENST00000430038 MLLT1Q03111 559 aaPredicted RBP21.27■■□□□ 1
CPSF4-203ENST00000430038 NFIAQ12857 509 aa21.27■■□□□ 1
CPSF4-203ENST00000430038 FAM83AQ86UY5 434 aa21.27■■□□□ 1
CPSF4-203ENST00000430038 ZFPM1Q8IX07 1006 aa21.27■■□□□ 1
CPSF4-203ENST00000430038 ZKSCAN4Q969J2 545 aaPredicted RBP21.27■■□□□ 1
CPSF4-203ENST00000430038 GNAI3P08754 354 aa21.26■□□□□ 0.99
CPSF4-203ENST00000430038 CRHR2Q13324 411 aa21.26■□□□□ 0.99
CPSF4-203ENST00000430038 FKBP1CQ5VVH2 108 aa21.26■□□□□ 0.99
CPSF4-203ENST00000430038 BRI3BPQ8WY22 251 aa21.26■□□□□ 0.99
CPSF4-203ENST00000430038 SNCAIPQ9Y6H5 919 aa21.26■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms