RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 USP2O75604 605 aaPredicted RBP27.67■■■□□ 2.02
VTI1B-201ENST00000216456 IFIT1P09914 478 aaKnown RBP27.67■■■□□ 2.02
VTI1B-201ENST00000216456 TM4SF4P48230 202 aa27.67■■■□□ 2.02
VTI1B-201ENST00000216456 MAP3K11Q16584 847 aa27.67■■■□□ 2.02
VTI1B-201ENST00000216456 TMEM39BQ9GZU3 492 aa27.67■■■□□ 2.02
VTI1B-201ENST00000216456 REM2Q8IYK8 340 aaPredicted RBP27.66■■■□□ 2.02
VTI1B-201ENST00000216456 MIER1Q8N108 512 aa27.66■■■□□ 2.02
VTI1B-201ENST00000216456 SLC10A4Q96EP9 437 aa27.66■■■□□ 2.02
VTI1B-201ENST00000216456 TEPSINQ96N21 525 aa27.66■■■□□ 2.02
VTI1B-201ENST00000216456 BCAR3O75815 825 aa27.65■■■□□ 2.02
VTI1B-201ENST00000216456 GJA5P36382 358 aa27.65■■■□□ 2.02
VTI1B-201ENST00000216456 PPP1R12BO60237 982 aaPredicted RBP27.64■■■□□ 2.02
VTI1B-201ENST00000216456 SLC5A1P13866 664 aa27.64■■■□□ 2.02
VTI1B-201ENST00000216456 SUPT20HL1Q3ZLR7 823 aa27.64■■■□□ 2.02
VTI1B-201ENST00000216456 WNK4Q96J92 1243 aa27.64■■■□□ 2.02
VTI1B-201ENST00000216456 ZNF296Q8WUU4 475 aaPredicted RBP27.63■■■□□ 2.01
VTI1B-201ENST00000216456 LPIN2Q92539 896 aa27.63■■■□□ 2.01
VTI1B-201ENST00000216456 TBC1D22AQ8WUA7 517 aa27.62■■■□□ 2.01
VTI1B-201ENST00000216456 ADORA1P30542 326 aa27.61■■■□□ 2.01
VTI1B-201ENST00000216456 ATP2B3Q16720 1220 aa27.61■■■□□ 2.01
VTI1B-201ENST00000216456 APOBEC3HQ6NTF7 200 aaKnown RBP27.61■■■□□ 2.01
VTI1B-201ENST00000216456 CNKSR2Q8WXI2 1034 aa27.61■■■□□ 2.01
VTI1B-201ENST00000216456 TEKT1Q969V4 418 aa27.61■■■□□ 2.01
VTI1B-201ENST00000216456 KIF16BQ96L93 1317 aa27.61■■■□□ 2.01
VTI1B-201ENST00000216456 CIAO1O76071 339 aa27.6■■■□□ 2.01
VTI1B-201ENST00000216456 TRIM27P14373 513 aa27.6■■■□□ 2.01
VTI1B-201ENST00000216456 SREBF2Q12772 1141 aa27.6■■■□□ 2.01
VTI1B-201ENST00000216456 INTS3Q68E01 1043 aaKnown RBP27.6■■■□□ 2.01
VTI1B-201ENST00000216456 FRAT1Q92837 279 aaPredicted RBP27.6■■■□□ 2.01
VTI1B-201ENST00000216456 ELP3Q9H9T3 547 aa27.6■■■□□ 2.01
VTI1B-201ENST00000216456 CEP126Q9P2H0 1117 aa27.6■■■□□ 2.01
VTI1B-201ENST00000216456 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP27.6■■■□□ 2.01
VTI1B-201ENST00000216456 IGF2BP3O00425 579 aaKnown RBP eCLIP27.59■■■□□ 2.01
VTI1B-201ENST00000216456 PHKA1P46020 1223 aa27.59■■■□□ 2.01
VTI1B-201ENST00000216456 IREB2P48200 963 aaKnown RBP27.59■■■□□ 2.01
VTI1B-201ENST00000216456 TNFAIP1Q13829 316 aa27.59■■■□□ 2.01
VTI1B-201ENST00000216456 CTU1Q7Z7A3 348 aaKnown RBP27.59■■■□□ 2.01
VTI1B-201ENST00000216456 CLUAP1Q96AJ1 413 aa27.59■■■□□ 2.01
VTI1B-201ENST00000216456 OTOFQ9HC10 1997 aa27.59■■■□□ 2.01
VTI1B-201ENST00000216456 GPR25O00155 361 aa27.58■■■□□ 2.01
VTI1B-201ENST00000216456 HDLBPQ00341 1268 aaKnown RBP27.58■■■□□ 2.01
VTI1B-201ENST00000216456 DIXDC1Q155Q3 683 aa27.58■■■□□ 2.01
VTI1B-201ENST00000216456 ZDHHC15Q96MV8 337 aa27.58■■■□□ 2.01
VTI1B-201ENST00000216456 PRDX5P30044 214 aa27.57■■■□□ 2
VTI1B-201ENST00000216456 PPP1R3FQ6ZSY5 799 aaPredicted RBP27.57■■■□□ 2
VTI1B-201ENST00000216456 IFNL1Q8IU54 200 aa27.57■■■□□ 2
VTI1B-201ENST00000216456 ARHGAP45Q92619 1136 aa27.57■■■□□ 2
VTI1B-201ENST00000216456 COPRSQ9NQ92 184 aa27.57■■■□□ 2
VTI1B-201ENST00000216456 ANKRD13AQ8IZ07 590 aa27.56■■■□□ 2
VTI1B-201ENST00000216456 MANSC4A6NHS7 340 aaPredicted RBP27.55■■■□□ 2
VTI1B-201ENST00000216456 ZBTB48P10074 688 aaPredicted RBP27.55■■■□□ 2
VTI1B-201ENST00000216456 IL15P40933 162 aaPredicted RBP27.55■■■□□ 2
VTI1B-201ENST00000216456 SRGAP3O43295 1099 aa27.54■■■□□ 2
VTI1B-201ENST00000216456 TNNI2P48788 182 aa27.54■■■□□ 2
VTI1B-201ENST00000216456 TIMM10P62072 90 aa27.54■■■□□ 2
VTI1B-201ENST00000216456 HNRNPUQ00839 825 aaKnown RBP eCLIP27.54■■■□□ 2
VTI1B-201ENST00000216456 WDR66Q8TBY9 1149 aa27.54■■■□□ 2
VTI1B-201ENST00000216456 OPTNQ96CV9 577 aa27.54■■■□□ 2
VTI1B-201ENST00000216456 PTPN18Q99952 460 aa27.54■■■□□ 2
VTI1B-201ENST00000216456 FBXO3Q9UK99 471 aa27.54■■■□□ 2
VTI1B-201ENST00000216456 SOX10P56693 466 aa27.53■■■□□ 2
VTI1B-201ENST00000216456 VGLL4Q14135 290 aa27.53■■■□□ 2
VTI1B-201ENST00000216456 ATF7IPQ6VMQ6 1270 aa27.53■■■□□ 2
VTI1B-201ENST00000216456 DAGLAQ9Y4D2 1042 aa27.53■■■□□ 2
VTI1B-201ENST00000216456 MYH13Q9UKX3 1938 aa27.52■■■□□ 2
VTI1B-201ENST00000216456 TFCP2Q12800 502 aa27.52■■■□□ 2
VTI1B-201ENST00000216456 HHIPL2Q6UWX4 724 aa27.52■■■□□ 2
VTI1B-201ENST00000216456 MRIQ9BWK5 157 aa27.52■■■□□ 2
VTI1B-201ENST00000216456 SUGT1Q9Y2Z0 365 aa27.52■■■□□ 2
VTI1B-201ENST00000216456 GNAI3P08754 354 aa27.51■■□□□ 1.99
VTI1B-201ENST00000216456 RGS19P49795 217 aa27.51■■□□□ 1.99
VTI1B-201ENST00000216456 DIEXFQ68CQ4 756 aaKnown RBP27.51■■□□□ 1.99
VTI1B-201ENST00000216456 CCDC102BQ68D86 513 aa27.51■■□□□ 1.99
VTI1B-201ENST00000216456 DDX55Q8NHQ9 600 aaKnown RBP eCLIP27.51■■□□□ 1.99
VTI1B-201ENST00000216456 MAST3O60307 1309 aa27.5■■□□□ 1.99
VTI1B-201ENST00000216456 PNMA6EA0A0J9YXQ4 647 aa27.5■■□□□ 1.99
VTI1B-201ENST00000216456 MAP3K9P80192 1104 aa27.5■■□□□ 1.99
VTI1B-201ENST00000216456 NFIAQ12857 509 aa27.5■■□□□ 1.99
VTI1B-201ENST00000216456 TMEM57Q8N5G2 664 aa27.5■■□□□ 1.99
VTI1B-201ENST00000216456 CFHR5Q9BXR6 569 aa27.5■■□□□ 1.99
VTI1B-201ENST00000216456 HPS5Q9UPZ3 1129 aa27.5■■□□□ 1.99
VTI1B-201ENST00000216456 UNCXA6NJT0 531 aa27.49■■□□□ 1.99
VTI1B-201ENST00000216456 FKTNO75072 461 aa27.49■■□□□ 1.99
VTI1B-201ENST00000216456 TCP10Q12799 353 aa27.49■■□□□ 1.99
VTI1B-201ENST00000216456 CDC42EP5Q6NZY7 148 aa27.49■■□□□ 1.99
VTI1B-201ENST00000216456 MIGA2Q7L4E1 593 aa27.49■■□□□ 1.99
VTI1B-201ENST00000216456 MS4A4AQ96JQ5 239 aa27.49■■□□□ 1.99
VTI1B-201ENST00000216456 TMOD2Q9NZR1 351 aa27.49■■□□□ 1.99
VTI1B-201ENST00000216456 IPO8O15397 1037 aaKnown RBP27.48■■□□□ 1.99
VTI1B-201ENST00000216456 MLLT1Q03111 559 aaPredicted RBP27.48■■□□□ 1.99
VTI1B-201ENST00000216456 MTX1Q13505 466 aa27.48■■□□□ 1.99
VTI1B-201ENST00000216456 RASGRF1Q13972 1273 aa27.48■■□□□ 1.99
VTI1B-201ENST00000216456 ZKSCAN4Q969J2 545 aaPredicted RBP27.48■■□□□ 1.99
VTI1B-201ENST00000216456 OTUD5Q96G74 571 aa27.48■■□□□ 1.99
VTI1B-201ENST00000216456 GNL3LQ9NVN8 582 aaKnown RBP27.48■■□□□ 1.99
VTI1B-201ENST00000216456 HDAC5Q9UQL6 1122 aa27.48■■□□□ 1.99
VTI1B-201ENST00000216456 A0A1B0GUL7 405 aa27.47■■□□□ 1.99
VTI1B-201ENST00000216456 LDHBP07195 334 aaKnown RBP27.47■■□□□ 1.99
VTI1B-201ENST00000216456 INHBEP58166 350 aa27.47■■□□□ 1.99
VTI1B-201ENST00000216456 CRHR2Q13324 411 aa27.47■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 8.7 ms